RNA id: TU207893


Basic Information

Item Value
RNA id TU207893
length 596
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G175676
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3922313 ~ 3922941 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaGTTTACATTTCTGTAGCTTTGAGACAACATGATTTAATTCTATAATCAGGAGTGTTGTACTCATTCCTGGAGCagtaatttttcttctttttgtctaACACACCAAATTCAGCACAGGAAGGACTGATAATGAGTGTGAAATGCTGAACTCTGAAACACTGCTATACTCCAAGCCTGAGCTGCTATACTCCAAGCTTTAACTATGAGCATCTACAGTACTCACTTTTGCACACCAGTGACCATTCAGTCATATGCGCCtaagtatatagtgtatatctttAATCTAATGCTGTTTTTCCTGTCCACAGAGCTTTGAGTGAACCTTTACATGGTGCACTTCCTGCTAAAAGCTACTGCTCTTGTAGACAAGCTGAACACTGGCACATGAAGCAGGATAATGGTGACCAGATTGTACATACAGTTATGGTCTTGAGTAATAGTTTTCTACGGCGGACTGCTAAAGGCTTTCAGGCTCAGTGAAGTTTGCAGAGCTCAGTGTCCAGGTTTAGATGATGTAGTCGATCTCGGAGTATATTGTGTCACTCAGAGTTTCTTCGCTGGTGGTCGGACTTTTCAAGCACACCAATCTGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207812 lncRNA downstream 102783 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA downstream 126388 3795679 ~ 3795925 (-) True G175611
TU207665 lncRNA downstream 340342 3549865 ~ 3581971 (-) True serf2
XR_003403695.2 lncRNA downstream 344340 3572658 ~ 3577973 (-) True LOC113536694
TU207646 lncRNA downstream 410081 3511991 ~ 3512232 (-) True G175483
TU208008 lncRNA upstream 153203 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA upstream 161031 4083972 ~ 4086193 (-) True G175775
TU208115 lncRNA upstream 376036 4298977 ~ 4299868 (-) True G175854
TU208186 lncRNA upstream 576537 4499478 ~ 4504321 (-) False lto1
TU208239 lncRNA upstream 699187 4622128 ~ 4622987 (-) True G175963
XM_034308622.1 mRNA downstream 12420 3851847 ~ 3909893 (-) False mical2a
XM_026930830.2 mRNA downstream 12420 3851847 ~ 3909893 (-) True mical2a
XM_026930831.2 mRNA downstream 12421 3851847 ~ 3909892 (-) False mical2a
XM_034308626.1 mRNA downstream 12421 3857751 ~ 3909892 (-) False mical2a
XM_034308621.1 mRNA downstream 12422 3851847 ~ 3909891 (-) False mical2a
XM_034308620.1 mRNA upstream 1306 3924247 ~ 3952150 (-) True usp47
XM_026930435.2 mRNA upstream 2703 3925644 ~ 3952150 (-) False usp47
XM_026930436.2 mRNA upstream 2703 3925644 ~ 3952150 (-) False usp47
XM_026930773.2 mRNA upstream 32056 3954997 ~ 3959191 (-) True clec3a
XM_026930775.2 mRNA upstream 32057 3954998 ~ 3959953 (-) False clec3a
XR_003403696.2 other downstream 12422 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other downstream 12424 3855191 ~ 3909889 (-) False mical2a
TU207666 other downstream 350051 3569341 ~ 3572262 (-) True G175497
XR_003403706.2 other downstream 621043 3301139 ~ 3301270 (-) True LOC113536796
XR_003403704.2 other downstream 782152 3140070 ~ 3140161 (-) True LOC113536794
TU207939 other upstream 69785 3992726 ~ 3996433 (-) True bola3
XR_003403702.2 other upstream 125924 4048865 ~ 4049043 (-) True LOC113536792
XR_003403701.2 other upstream 129648 4052589 ~ 4052767 (-) True LOC113536791
XR_003403709.1 other upstream 172266 4095207 ~ 4095262 (-) True LOC113536799
XR_003403699.1 other upstream 173773 4096714 ~ 4096770 (-) True LOC113536789

Expression Profile