Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU208239 |
| length | 757 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 2 |
| gene id | G175963 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 4622128 ~ 4622987 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU208186 | lncRNA | downstream | 117807 | 4499478 ~ 4504321 (-) | False | lto1 |
| TU208115 | lncRNA | downstream | 322260 | 4298977 ~ 4299868 (-) | True | G175854 |
| TU208008 | lncRNA | downstream | 484249 | 4076144 ~ 4137879 (-) | True | G175767 |
| TU208017 | lncRNA | downstream | 535935 | 4083972 ~ 4086193 (-) | True | G175775 |
| TU207893 | lncRNA | downstream | 699187 | 3922313 ~ 3922941 (-) | True | G175676 |
| TU208248 | lncRNA | upstream | 7361 | 4630348 ~ 4632785 (-) | True | G175967 |
| TU208311 | lncRNA | upstream | 109395 | 4732382 ~ 4736416 (-) | True | G176015 |
| TU208331 | lncRNA | upstream | 217001 | 4839988 ~ 4840693 (-) | True | G176028 |
| TU208332 | lncRNA | upstream | 217761 | 4840748 ~ 4847141 (-) | True | G176029 |
| TU208726 | lncRNA | upstream | 487127 | 5110114 ~ 5113268 (-) | True | G176336 |
| XM_026930626.2 | mRNA | downstream | 24355 | 4587003 ~ 4597773 (-) | True | zgc:153993 |
| XM_026930757.2 | mRNA | downstream | 81016 | 4536922 ~ 4541112 (-) | True | fgf3 |
| XM_026930737.2 | mRNA | downstream | 92401 | 4524986 ~ 4529727 (-) | True | fgf4 |
| XM_026930795.2 | mRNA | downstream | 109929 | 4509420 ~ 4512199 (-) | True | fgf19 |
| XM_026930851.2 | mRNA | downstream | 117799 | 4498946 ~ 4504329 (-) | True | lto1 |
| XM_026930525.2 | mRNA | upstream | 33619 | 4656606 ~ 4688578 (-) | False | pacsin3 |
| XM_026930523.2 | mRNA | upstream | 33619 | 4656606 ~ 4688576 (-) | False | pacsin3 |
| XM_026930522.2 | mRNA | upstream | 33619 | 4656606 ~ 4688576 (-) | True | pacsin3 |
| XM_026930524.2 | mRNA | upstream | 33619 | 4656606 ~ 4670231 (-) | False | pacsin3 |
| XM_034308979.1 | mRNA | upstream | 115096 | 4738083 ~ 4861628 (-) | True | neo1a |
| XR_003403708.1 | other | downstream | 521702 | 4100371 ~ 4100426 (-) | True | LOC113536798 |
| XR_003403707.1 | other | downstream | 522277 | 4099795 ~ 4099851 (-) | True | LOC113536797 |
| XR_003403699.1 | other | downstream | 525358 | 4096714 ~ 4096770 (-) | True | LOC113536789 |
| XR_003403709.1 | other | downstream | 526866 | 4095207 ~ 4095262 (-) | True | LOC113536799 |
| XR_003403701.2 | other | downstream | 569361 | 4052589 ~ 4052767 (-) | True | LOC113536791 |
| TU208693 | other | upstream | 456830 | 5079817 ~ 5080895 (-) | True | G176307 |
| TU208689 | other | upstream | 516623 | 5139610 ~ 5190522 (-) | False | trip4 |
| TU208736 | other | upstream | 568977 | 5191964 ~ 5196818 (-) | False | trip4 |
| trnai-uau_1 | other | upstream | 667515 | 5290502 ~ 5290594 (-) | True | trnai-uau_1 |
| trnai-uau_2 | other | upstream | 691175 | 5314162 ~ 5314254 (-) | True | trnai-uau_2 |
