RNA id: TU208248


Basic Information

Item Value
RNA id TU208248
length 2418
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G175967
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4630348 ~ 4632785 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAGCGCCATAAAGATGGAGAAGAAGACGGTGGCCGCATTGTCGAACAGGTGGCTGGCCCTGGCAGTGCCGCAGGCTTCGACGAGCTTCCAGTAGCTGCATGCACGATCGCACAGCGGGCACATGGTGATGTTGTTCCTTTCATCACAGATCTCCATACTGACGCATGTAGGAAACGGgacaggagatcagcagcatGTTATCTCTTTCCTGAAAATTACTCTTCCTTTAGCTACTGGTTTAAATGGGGATTTAAATTAAGTGCATTTAGGCAGATTTACACTCTGATCTcgtttgtatatatatactcatCATGGACATTTCATAATATAGTCAATAGAGGTAATGCAACATTGTACATTTGCATTGGATTTTGCTGAGTTCAAAATAATAGGAACATAGCCAGCacaatttgttcatttatttaaaacttaaaatactTTTATCCTAACTACGCATATACTAATTAGAGTTCTTGAATATATGAATTctttcaatattcaatattataaACAGACAGAGCAGAGCATACATACTTCAAGTTCTTAACTTGACAGTGATTCAGCATTCACAAAGGATTAATGCATGACACGCTACTCTAAATACCAAATGTCAAACATTTAATTGTTGCCAATGTCAAAAGTTGTTAGCTCTAGGGCTGTAGGCGGGACTGAGctttcaataaaatgtttctgtagctCTTTTTCCACTCATAGTCAAAGAAAAGTACTACTTGTTCAAATGACACCTTTTAAGACCTTTCTCAATCAATTTAAATAGActtcaattttcatttttatttaaaatctatgAAGAATACATAATTAAGACTGTAAGCTCTTCTATAAAAATTCAACCAAAAGTTACCAGAGATGTTCACAAGCCACTTATGCAAGTTTTAAGTCGTAAATGCAACATTCATATCATTAGCTGTGGCGTTAACATTGTTATATCATTTCTGTGGAAAGCACTGCAGTTCATAGTCATAGGAGCttatttatatagtttaatATCATGATTTTCCAGTAAGGGAAATTCTTCTTTATTAACCAATTTGCTTGTGGTTCAAGATTATAATCTTAATTGCCAATTATTTCTATCATGCTACATCTTCGTGATACCCACACTCTTCCTAAGGAGAGATATTACAACATTAATTTCTAGCATGTAGCCAGAAGAACACAGTGAATAAGTGACTATAACCAACATTTAAGTAGCTGTGCTCATTTTACCTTCTTAATAATGCATTCATCCTATTTACCATGCGAGGATAAATCGTGTGAGTGTGTTGTACATTTTGGATACAGTTTAAAAAACTGAGGATTAGTTTCTTTTTCCAAACTTCTGTAATTACGAATATCTGTTTTTCTGACTCACTTTTTTGAGACAGCAATCTTGCTGTGAAAAAAGTTTTGCTCTACAGAGCTgctgaggtgacatggtggttatttttaataatgtgtggacacaaattaatatattgagACCATGAGTTAATATTTTGAAGCCAATAGTCTCTAATAGTCTTGATTTATGTCGTGTCCACGAGATACCAAAGTCAAGATACCAGTGATATACTTGGCCACGAATTGTGTAACTTGAGGCCGCAACTTAACCTGCAATGGGAACGCCATACTGAATATGTGGCCTCTTGTTAATTATTGGGTGGGAACTGGCGAAAAAGTCTATTCACTTAAGGCGAGAATTCACTTAAGGTGACATGGACTAATGCTATAGCCACATTGCAACATTAGTGACTCCAGTGTGTCTTTACACAGCATTCCATAATGTGTAATATTGTCAGTAATCTCTATGCTTAGTTTCCATGGCCACACATTGTTTAGTTCAACTGATTTGTCTGGGTGCGACTGTTTTCATAGtcacaaaaacagattttgagAAACTTAATTTGGCACGGCTCAggaatgtttttggtttttgcacTTCATTATGGCTTCGAGTTACATTTGAATAGCACTGTAATAAATGACTACACATGACAGTCATAAAATTGACATTCTTTTCCTGAATTTAGACTGATGAATCTAatttagcattttgtttttttaaatcaaggcATATATTCCATGCGTCTAGTCGTGAACTCCCTAACTCAAGTCTACGTCTCTGGCAATTACTGTATCTACACAGCCTTTTGCATATAAGCAGTCCATTGAGtacaaaaaatgcaaagaagAAACAAATGTAAGAGAAACACAATGACCTGAGTCCAGTGTTATGGAGTTTTCCCTTATAAGGAAATGTACTGATATACTGCaaatactattatatattatgtattatatttatcagtatatgtatttttacataaatatattgttAAATGCATTGTGATATATCTAATAAGGCCACATTTTTCCtccagttttgtttttgatgtCAAAGTGCCTGTATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208239 lncRNA downstream 7361 4622128 ~ 4622987 (-) True G175963
TU208186 lncRNA downstream 126027 4499478 ~ 4504321 (-) False lto1
TU208115 lncRNA downstream 330480 4298977 ~ 4299868 (-) True G175854
TU208008 lncRNA downstream 492469 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA downstream 544155 4083972 ~ 4086193 (-) True G175775
TU208311 lncRNA upstream 99597 4732382 ~ 4736416 (-) True G176015
TU208331 lncRNA upstream 207203 4839988 ~ 4840693 (-) True G176028
TU208332 lncRNA upstream 207963 4840748 ~ 4847141 (-) True G176029
TU208726 lncRNA upstream 477329 5110114 ~ 5113268 (-) True G176336
TU208744 lncRNA upstream 671829 5304614 ~ 5407099 (-) True G176354
XM_026930626.2 mRNA downstream 32575 4587003 ~ 4597773 (-) True zgc:153993
XM_026930757.2 mRNA downstream 89236 4536922 ~ 4541112 (-) True fgf3
XM_026930737.2 mRNA downstream 100621 4524986 ~ 4529727 (-) True fgf4
XM_026930795.2 mRNA downstream 118149 4509420 ~ 4512199 (-) True fgf19
XM_026930851.2 mRNA downstream 126019 4498946 ~ 4504329 (-) True lto1
XM_026930525.2 mRNA upstream 23821 4656606 ~ 4688578 (-) False pacsin3
XM_026930523.2 mRNA upstream 23821 4656606 ~ 4688576 (-) False pacsin3
XM_026930522.2 mRNA upstream 23821 4656606 ~ 4688576 (-) True pacsin3
XM_026930524.2 mRNA upstream 23821 4656606 ~ 4670231 (-) False pacsin3
XM_034308979.1 mRNA upstream 105298 4738083 ~ 4861628 (-) True neo1a
XR_003403708.1 other downstream 529922 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 530497 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 533578 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 535086 4095207 ~ 4095262 (-) True LOC113536799
XR_003403701.2 other downstream 577581 4052589 ~ 4052767 (-) True LOC113536791
TU208693 other upstream 447032 5079817 ~ 5080895 (-) True G176307
TU208689 other upstream 506825 5139610 ~ 5190522 (-) False trip4
TU208736 other upstream 559179 5191964 ~ 5196818 (-) False trip4
trnai-uau_1 other upstream 657717 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 681377 5314162 ~ 5314254 (-) True trnai-uau_2

Expression Profile