Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU208331 |
| length | 678 |
| lncRNA type | intronic |
| GC content | 0.45 |
| exon number | 2 |
| gene id | G176028 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 4839988 ~ 4840693 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU208311 | lncRNA | downstream | 103572 | 4732382 ~ 4736416 (-) | True | G176015 |
| TU208248 | lncRNA | downstream | 207203 | 4630348 ~ 4632785 (-) | True | G175967 |
| TU208239 | lncRNA | downstream | 217001 | 4622128 ~ 4622987 (-) | True | G175963 |
| TU208186 | lncRNA | downstream | 335667 | 4499478 ~ 4504321 (-) | False | lto1 |
| TU208115 | lncRNA | downstream | 540120 | 4298977 ~ 4299868 (-) | True | G175854 |
| TU208332 | lncRNA | upstream | 55 | 4840748 ~ 4847141 (-) | True | G176029 |
| TU208726 | lncRNA | upstream | 269421 | 5110114 ~ 5113268 (-) | True | G176336 |
| TU208744 | lncRNA | upstream | 463921 | 5304614 ~ 5407099 (-) | True | G176354 |
| TU208989 | lncRNA | upstream | 791133 | 5631826 ~ 5715020 (-) | True | G176556 |
| TU209305 | lncRNA | upstream | 1242135 | 6082828 ~ 6167802 (-) | True | G176817 |
| XM_026930525.2 | mRNA | downstream | 151410 | 4656606 ~ 4688578 (-) | False | pacsin3 |
| XM_026930523.2 | mRNA | downstream | 151412 | 4656606 ~ 4688576 (-) | False | pacsin3 |
| XM_026930522.2 | mRNA | downstream | 151412 | 4656606 ~ 4688576 (-) | True | pacsin3 |
| XM_026930524.2 | mRNA | downstream | 169757 | 4656606 ~ 4670231 (-) | False | pacsin3 |
| XM_026930626.2 | mRNA | downstream | 242215 | 4587003 ~ 4597773 (-) | True | zgc:153993 |
| XM_026930860.2 | mRNA | upstream | 67240 | 4907933 ~ 4919259 (-) | True | scamp2l |
| XM_034308991.1 | mRNA | upstream | 82670 | 4923363 ~ 5032894 (-) | False | myo9aa |
| XM_034308996.1 | mRNA | upstream | 82670 | 4923363 ~ 5032894 (-) | False | myo9aa |
| XM_034308995.1 | mRNA | upstream | 82670 | 4923363 ~ 5032894 (-) | False | myo9aa |
| XM_034308992.1 | mRNA | upstream | 82670 | 4923363 ~ 5032894 (-) | False | myo9aa |
| XR_003403708.1 | other | downstream | 739562 | 4100371 ~ 4100426 (-) | True | LOC113536798 |
| XR_003403707.1 | other | downstream | 740137 | 4099795 ~ 4099851 (-) | True | LOC113536797 |
| XR_003403699.1 | other | downstream | 743218 | 4096714 ~ 4096770 (-) | True | LOC113536789 |
| XR_003403709.1 | other | downstream | 744726 | 4095207 ~ 4095262 (-) | True | LOC113536799 |
| XR_003403701.2 | other | downstream | 787221 | 4052589 ~ 4052767 (-) | True | LOC113536791 |
| TU208693 | other | upstream | 239124 | 5079817 ~ 5080895 (-) | True | G176307 |
| TU208689 | other | upstream | 298917 | 5139610 ~ 5190522 (-) | False | trip4 |
| TU208736 | other | upstream | 351271 | 5191964 ~ 5196818 (-) | False | trip4 |
| trnai-uau_1 | other | upstream | 449809 | 5290502 ~ 5290594 (-) | True | trnai-uau_1 |
| trnai-uau_2 | other | upstream | 473469 | 5314162 ~ 5314254 (-) | True | trnai-uau_2 |
