RNA id: XM_026930772.2


Basic Information

Item Value
RNA id XM_026930772.2
length 2180
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC113536673
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10605511 ~ 10695119 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCGTTTCTCGTCTCAGCACCATGTTCCAGCTGCTGAAGAAGTGTCTGATTCTCCTATTTTTCTATTTGTGCTGCGTTCCagtgggCTGTGATGATGTTCTCCATGTGAATGGAACAGAAGGCCAGAATCTCACAGTTACATTCATGCTGAAGAGCACAATTGAAACCACCAAGGAAGTGTACATGTACCGAGACAACACAAAGATTCACAAGCTCACCATAACCAACATGTCCTGCTTTCCATCTGTAAACCACACACTGCCCACCATCTGCATCTCCCATGTGTCCCAAAGAAACATCAGTCTGATGTTCACACATCTCATACACAGTGGAGTGTATCACCTTGCTGTGTTATCTCCAAACTTCACACTGGAAGAAAGTAACAAAGTGAGCTTGACTGTACACCCCGCTGAGTACACAACAACATACACCACAGttacaGCTGCCTTATTCAATAACACATCCTTCCAACTGGACCAATCAGGAAAAAAGTCCAGCATTTTGATGTTTGTTCCAGTGCTGGTTGTAGCCGTGATGTTGGTGATTGTTCTGCTCGGCTCATTTTACTGGAGCTACAGGAGGAAAACAGACAAAACTCCTGCTGTGAACTCCACATCTGCACCACAGattCCTGATGTTAGCTGTGTTGAGTACTGTGTTCTGGACTTTCCAAACCGAGCTGGAGAGAAAGTGAGGAGCACAGAGGAGCGAGTGGAGTATTCCCCCATCGTGTTTCCCCCAAGAAAAACGTCAGCACAAGACAATGAGATAAAATCAACGACACaacaaaataagataaaaatgacAACACTGCAGCatgaggagagagaaacagacaaagtGTCTGAGAAACCAAAAACATCAAAACCTAAACATcagaaatgtcaaaaaaaaaatcacacctaATCACATCCTGTCACACTCAAAAGGCACAAGTGTGATtcacacaaacatattttaGGCCACTGAATACAttgcatgcattttttaaaaattattattagtttgcAGATAACACAAATTTTATGCTAAGCATGTATCAGGACGCATATTGACGTTCACATCAAATTTTCTCTTCAGgtgctctgcatttaattattaattattaattattttaattactacACTTTAAGTATTACAGTTTCCTTACATATCAGCCTGCAAGAGGAAACAATAACTCCCGTATTCCTGTAGTGGTGATAATGTGCCCTCATCCACTTCCCCTCATCCGCTTCTATTCAAAATCCACAAAACCATGATACAGCAGCTGAGAAAATGAGTAGAGCGTAAGAGggaacatgtacagtatatgttgtaaataataaatacaaaattaagtatatgtagttttactctcattggttcccTGACTTTTGAGTGGTTAAGGAAAGTGGACAAGGGCACGTTATAAATAGTATTGAAACACAAggagatgtttggtgtgaaaataaaaagataaagtaTGTGTTCTACTGGGAGAAACATTGCTGTTTCAATACAGCACACAACAATACAGCAAAAGAGacaactgtgtatgtgtgtgtgtgtgtgtgtactgcagtGCAGTGTACCAATGTTACTTAGGTGACAACCACATACACCATGGTGTGAAATCcccaacacacacgcacacacacacacacacacacacattgctacTGTTTTACAAGGTGTCCGAAAAGTCAGCAACCAAATAATATGTCATACAAACATGTTGATCcataaaaacatgatacagtgGCTGAGAAAATGAGTAGAGCGTAAGGGtgaacatgtacagtatatgttataaataataaatacaaaattaagtatatgtagttttactctcattggttcatGACTTTTCCGACATCCTGTAttatacataaaaaacacagaatCTTATTGCAATGGTGATATATCAGAGTGATGATATACAACAATAATCTAAAATCTTTATATCGTTGACATAAAATGATGATACATGAGGGATATTAATATTCAGATATGTATATTGTTAGCATTGTGATACACTAGTATAATGACATCACAGTAAATATAGAGTTATGTATCAGGGACAGAGTGTGATGATCTTTCAGGGTCGAGGtaaattaaacatatataataatgaaatcTTTCTCAAAATAAACCTTTATCTTTATCTTCATATCATTATGTTGAGAAACCATATCATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212351 lncRNA downstream 26057 10578420 ~ 10579460 (-) True G179487
TU212349 lncRNA downstream 29485 10574536 ~ 10576032 (-) True G179485
TU212342 lncRNA downstream 42065 10561403 ~ 10563452 (-) True G179478
TU212327 lncRNA downstream 90316 10514696 ~ 10515201 (-) True G179469
TU212324 lncRNA downstream 93493 10511621 ~ 10512024 (-) True G179466
TU212640 lncRNA upstream 578165 11194437 ~ 11195673 (-) True G179727
TU212748 lncRNA upstream 792820 11409092 ~ 11420046 (-) True G179803
TU212763 lncRNA upstream 894827 11511099 ~ 11513673 (-) False LOC113536577
TU212764 lncRNA upstream 913351 11529623 ~ 11532033 (-) False LOC117598402
TU212779 lncRNA upstream 942647 11558919 ~ 11562343 (-) True G179827
XM_026930644.2 mRNA downstream 8279 10594672 ~ 10597238 (-) True LOC113536600
XM_034308849.1 mRNA downstream 12553 10580693 ~ 10592964 (-) False LOC113536758
XM_026930896.2 mRNA downstream 12553 10580693 ~ 10592964 (-) True LOC113536758
XM_034308454.1 mRNA downstream 50319 10544767 ~ 10555198 (-) False rnf13
XM_026930895.2 mRNA upstream 7017 10623289 ~ 10635357 (-) True nmur1a
XM_026930349.2 mRNA upstream 22749 10639021 ~ 10644194 (-) True hykk.2
XM_026930385.2 mRNA upstream 479855 11096127 ~ 11108565 (-) True mfsd8l1
XM_034308481.1 mRNA upstream 481747 11098019 ~ 11107832 (-) False mfsd8l1
XM_026930766.2 mRNA upstream 494273 11110545 ~ 11113589 (-) True polr2h
TU211855 other downstream 790292 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 1082187 9522416 ~ 9523330 (-) True G178942
trnae-uuc_3 other downstream 1714819 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 2357755 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 2358742 8246703 ~ 8246775 (-) True trnar-acg_7
TU212647 other upstream 627703 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 792820 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 879802 11496074 ~ 11503962 (-) False LOC117598430
TU213621 other upstream 2101089 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 2620131 13236403 ~ 13236475 (-) True trnam-cau_27

Expression Profile