RNA id: TU213324


Basic Information

Item Value
RNA id TU213324
length 3696
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G180273
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12174862 ~ 12300865 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTTTGTGTCTTACAGCTAGATTTCTTTGTGAGTAAAATATACTAAGTAGAAAATAATCACAGTGGTCCTGCGTGCTACAAACATCTGGaaaaacatctggaaaaatACAAGCACACAAAACGCCACATTCACACTCCTCGTCAAGTTCCCTACTAAAAGTGACTAGTGTAATTGGcaatgaagatttttttttaaacaaattacagGAAAAGGTGCTATACCAGAGCACAGCGTCACGgtagacgaaaaaaaaaaagacatggctGAATAAACCACTTCATCTCCGAATAAAAGGAAACATTACAACTTGGTAAAGGaggattattttaaaactttaacacAGTGGTCATGAGAGAACTgagagagatttttttgttacagttgAGAGGAAATGATACAGTCACGGTGCTGTTACAGTCTCGGAGTGAATCTTTGGTTCCTCACTAAAGGACGATCTTAGAATAAGGCttcatttctgattaaaacagatCTGTCAATGCCACATAGGAGAAAGTACAATAACTGATAGTCTAGGAAGAATTACAGCATTTGTCTTTTTTGCGACGAAGGATCTCATTCCCTTACTTCATGAAAAATGTGCGCTAAAGTCCGTTGGACATCATATAAGACATCACAGCATGAAATCTACATCATAtgtacaatatttacacagtgaAACCTCCAGCTCATACATGGAGACCCCGCACTCTGCAGTAGTTCAAACAGCAAATATACAAATCTCTTTCCAGAGTGTGAGCTCTGATCACGGGGGAGTTCTTTAGCGTGAGTCGAGATGTTCGGATTTCACATCCTGTAAGATTCATCCGAGTCTGAGATTCACACAATGAAGTGTGCAAAAAAGAAAGGCATAGAAATGatcacaacacatcaaattACAAACTTTCACCATGGCCACAAAAACACTTAGTTCTGATTGAATAAcaggtgctgtttttttttttaaacatagatCAGTTCTAAATCAGTGCTTCCGATATTCTGTAATCGTGCTggaatgtaaccatgacaaccatTTATGCATCACTAATGGgctgttaaacaaaaaaaatacgtTTATATTACAATTAAACTGCAATTGAATTGCAAATGATTCTGATATGTAACCAAAGTAGCAACAGTACCGTCGTAGCAAACTCATTTTCACTGGCCAAAAAATactcgtttctgattggctaTCAGGTGCTGTTATTTAATCTACATCAGTTCTAAATCAGGGTTTCCACATACTATGTAACCTTGTTAgtatgtaaccatgacaaccatTTACACTTCATTAATGTGCTGTTACACAAAGAAATATTGTTTAACTGCacagaaaataatgatttatagaGCATGGAAATGTTACAAATTAAGACAAGACGTAGCCATAGCAGTAACAGTATAACGGTAAGATATTGTTTTTACTTGACACAAACTACTCGCTTCTGATTGCCTAACAGGTgccattttttaatgatttaattgttttctttttttttaattggctgCAACAGAGTAACTGTGATGGTTCACGGTTTGAAAGCTGATTTATGGTCAGATTTCCGGATATTTCGACTGCTCAGTTCAAGTCAATTAATTAACACAATTAACACTTTGTTGGGTCCACATCAGTGGACAACCCATGCTCTACTTCACGGCCATGGtgtaagcaattaaaaaaaattaaaaataaaaaaaattgaaccaataaaaaaaaaaaaaggaaataacacACTATCCTTCATTTCATGAATTCTTCAGCACCACCTTCAGTGTGTTATTTTCTGGTATCTTCACTTTTTCATTGGCTGTCcatattttcaattttcaacAGCATGTCCCTCTCTAATCAAGCTGATTCGATTCGAGTCGTGATGCTGTGTGtcgcaaaataaaataaataaatacatttttaaaaaatcagcttAGTGAACTTTAGTTTCCTGTTTGATCCAACAGCAGctggaaaagaaaatattactgaaaaaagTTGTGAAAAGCTTAAATGTAGATGTTAAATAAGGAAAGTGtgcgcacacatgcacatatttttcagatttcagagTCTTCATCTGCACTCGTCAGCATGCATTATGTGTTTAATGAGCTCACTCTCAGTGCACACATCATTAAAGCACAGAGAGGCACAAGTCTGATCCTCGACTGTTTGATCCGTTTGGcactgagagaaacagaagatGAAGCTGACAAACTTAACATGCCCTGAAGGTAAGTATTGTGTTCCAGCCACCATGTTAACATCCATTCAGTAGTACTTATCCATAACAAGGAACATCTTCATAAAGACAATGTTAGTATAACTCaggcaaaaatatattttcaatatttagaGCTCTGATTATCAGCTGATATTTTGTTTCAAAGATGTTGCTGTGTTAAATGTACTCAAACTAATCAATAGATTAAATTGGAAAATGACAATAGATTTGATTGGATATCGATTCAGTATATAGGATCAGTATTGTATCAGTGCATTCCAACTTCAACATTAATAatagtatttgtttattttaaatatcagaGTCTAAAGTCtaagatctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcctaaaCTTAAAACTAAGTGCTGTGTGTTTGCGGGGAACCTGCTGCTATCTACAGTATGACttatttttcatcatgttttctatAAATAGTTGCAATTACTACTTAGCATACTCTTCTATCCCTTTTTTCTTCCGCACTAGGATCTTATTCCGGGGATGAATGAGGGACCGAGTGAAAGTTTATGGGAAAATGATCGTTCGCTTTGCTGCGTTAAAGATAAGAGCCACAGCAATTCCAAGCAGAGACAAGttcagctttaaaaacaaaacacaagggaaaaaaggaaaaaaaaccaaaacaagaaCATCATTCACATATACCCATACAGTAATATTGAGCCAAGCagaagcagggaaaaaaaaaaaaaaacaaaaaaccaaaacGTTTAACCCATTAAAAGTTCGCCTTTATCTCAGACTATGCATTTAAAAACCCCATTGATGTGGGTAATACTCCAGGAAGTGTCCCAAACAAGGCTCTTCTCTCCGTCTGAGAGGAACGCTCCAAGTCCAGGGGAGTCTGATGGCTGGGTTTGGTTTGAAGTCTGTGCAAGGCACTGTGGGTAACGGCCTTTAGGCTACACAACGCGCCACGTACGCTCTTCACTTGTGTCGCTAGAATCcgccagaaaaaaataaaaagagcacAACTAATTTCTAGCATGATCAAGAGGCTGAGGGAGCGAGCTGAGCCTCCCATGCTCGAGCCTTCCTGAGAATTCATCTTAAGCCGAgatttgtttaaagaaaaataaaacatgaaaacatttttggcaCACAGGATTGTCCTAGAAGAGCTAACCCATGCACAAGGGGAGGCGTGTAGCGTCCATCTCCCCcaaatttcattttcacagtAAGGAAAAATACATTGATGAAACaacagacaaaaacatttaacaggAAACACATTCAGTTCACGCAAGAAAGGGAACTATTTTCATCATGACATGACAAGTGTGTTGAAACAAGAGAAATAATTTGACATGAGCAGAACAAACCAAGAGCGTAAAAAGCTTATGCtggatttctgtgtgtgtttgtcctgtgacaggttttttttttttttttttttttttttttttttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213329 lncRNA downstream 90545 12075238 ~ 12084317 (-) True G180277
TU213330 lncRNA downstream 100331 12073269 ~ 12074531 (-) True G180278
TU213112 lncRNA downstream 120001 12053281 ~ 12054861 (-) True G180127
TU213099 lncRNA downstream 152699 12020413 ~ 12022163 (-) False ncln
TU213098 lncRNA downstream 153470 12020413 ~ 12021392 (-) False ncln
TU213439 lncRNA upstream 63234 12364099 ~ 12366101 (-) True G180361
TU213487 lncRNA upstream 185810 12486675 ~ 12487417 (-) True G180387
TU213492 lncRNA upstream 207076 12507941 ~ 12508232 (-) True G180392
TU213546 lncRNA upstream 275096 12575961 ~ 12619651 (-) False G180429
TU213549 lncRNA upstream 277853 12578718 ~ 12619651 (-) True G180429
XM_026930469.2 mRNA downstream 109063 12062995 ~ 12065799 (-) True s1pr4
XM_026930466.2 mRNA downstream 142856 12020412 ~ 12032006 (-) True ncln
XM_034308561.1 mRNA downstream 142963 12020412 ~ 12031899 (-) False ncln
XM_026930475.2 mRNA downstream 194202 11973681 ~ 11980660 (-) True LOC113536502
XM_026930461.2 mRNA downstream 201646 11958278 ~ 11973216 (-) True mccc1
XM_026930464.2 mRNA upstream 10741 12311606 ~ 12324367 (-) True enc3
XM_034308688.1 mRNA upstream 33337 12334202 ~ 12353009 (-) False tmprss9
XM_026930460.2 mRNA upstream 33337 12334202 ~ 12353009 (-) False tmprss9
XM_034308687.1 mRNA upstream 33337 12334202 ~ 12353009 (-) True tmprss9
XM_034308689.1 mRNA upstream 34160 12335025 ~ 12353009 (-) False tmprss9
TU212758 other downstream 670900 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 759422 11409092 ~ 11415440 (-) False G179803
TU212647 other downstream 928557 11243975 ~ 11246305 (-) False nppc
TU211855 other downstream 2359637 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 2651532 9522416 ~ 9523330 (-) True G178942
TU213621 other upstream 416496 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 935538 13236403 ~ 13236475 (-) True trnam-cau_27
TU214009 other upstream 938884 13239749 ~ 13243162 (-) False rpp21
TU214564 other upstream 2060071 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 2107861 14408726 ~ 14415069 (-) False rx1

Expression Profile