RNA id: TU213330


Basic Information

Item Value
RNA id TU213330
length 1042
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G180278
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12073269 ~ 12074531 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATTGAGTCCTGTATGTTTAATCCTAATGCCACAGTAATCCGAATGCCAAAATCCACAACAATAGCAGAAAAAAATCCTACATTTAACTGCAtgattaaaaatgctatacagTACTTCAGAAGCCTGAGGTTTCCATCCCTTCTAATTACTTAACAAAAGGGCAGCTTGGCTTTAGTTCAGTTATTTTAATTCACAAATAGTTTGACACATTACATCTCAAAGTAGCTTCCCTAACAATCCTGTCAGAAtggttacatttatttttataccaacctttttatttgatttagaCTAAATGATCTGCATCGCGATATTATTTATCATATCGTCCCATCTTTACAAAAGGAAAAAGACATATAACAAAAGGTTAAAAGTGAAAACTATTCCTGAACATTAAAGCACACTAACTTTACTCTTTTCTGTCCTAAAAATGAAgttgctaaaaagaaaaaaggccgTTAGCAGACATATAAAAAATGGCACACATTGTCAGTGTGAgatgtttcaaaaaaaaaaaaaaggcttttgttGTTTCACTGACTAAAGGTTACAAAGTTCAACAAAATCAcaatatggtttaaaaaaaaaaaaaaaaaaacacatttaacttACCTTGTGTGGTTACCTACTTTTTAAAGCGACACATGAATGATCAAATATATCCCCAGAAATATGTATtaagatatatatacagtcctAGCAGCAAAGAGACTTAATTCCAGTTGAAgtgtttttcagctttaatgCCAAACCAATAACCtaaaacatatatgtatatcGTTAAATGTTAGCGGACCAGCTAACCAACTTAGCTAGCGTTCCTCACCTTGGTCTTCCATGTCTTATCCCGAAAAAAAATCTACCCTGCATTCACAAAACAGCAGAAAATTTTAACGAGTCGTTACTTTTTCTCGTTCCAGTCGCACACGGCTAACTGTTTCCTCACACATCCGAGTTAAGAAATAAAGTAAGCAGCCGTTAAAATCACTTTTAAACTCGGCTCGCGCTGATGTGTCGCGCGCACTTCCTCCGGGTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213112 lncRNA downstream 18408 12053281 ~ 12054861 (-) True G180127
TU213099 lncRNA downstream 51106 12020413 ~ 12022163 (-) False ncln
TU213098 lncRNA downstream 51877 12020413 ~ 12021392 (-) False ncln
TU213101 lncRNA downstream 51877 12020604 ~ 12021392 (-) False ncln
TU213091 lncRNA downstream 76886 11996170 ~ 11996383 (-) True G180111
TU213329 lncRNA upstream 707 12075238 ~ 12084317 (-) True G180277
TU213324 lncRNA upstream 100331 12174862 ~ 12300865 (-) False G180273
TU213325 lncRNA upstream 114697 12189228 ~ 12233814 (-) True G180273
TU213322 lncRNA upstream 131928 12206459 ~ 12233814 (-) False G180273
XR_004579081.1 lncRNA upstream 164588 12239119 ~ 12249113 (-) True LOC117598410
XM_026930469.2 mRNA downstream 7470 12062995 ~ 12065799 (-) True s1pr4
XM_026930466.2 mRNA downstream 41263 12020412 ~ 12032006 (-) True ncln
XM_034308561.1 mRNA downstream 41370 12020412 ~ 12031899 (-) False ncln
XM_026930475.2 mRNA downstream 92609 11973681 ~ 11980660 (-) True LOC113536502
XM_026930461.2 mRNA downstream 100053 11958278 ~ 11973216 (-) True mccc1
XM_026930464.2 mRNA upstream 237075 12311606 ~ 12324367 (-) True enc3
XM_034308688.1 mRNA upstream 259671 12334202 ~ 12353009 (-) False tmprss9
XM_026930460.2 mRNA upstream 259671 12334202 ~ 12353009 (-) False tmprss9
XM_034308687.1 mRNA upstream 259671 12334202 ~ 12353009 (-) True tmprss9
XM_034308689.1 mRNA upstream 260494 12335025 ~ 12353009 (-) False tmprss9
TU212758 other downstream 569307 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 657829 11409092 ~ 11415440 (-) False G179803
TU212647 other downstream 826964 11243975 ~ 11246305 (-) False nppc
TU211855 other downstream 2258044 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 2549939 9522416 ~ 9523330 (-) True G178942
TU213621 other upstream 642830 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 1161872 13236403 ~ 13236475 (-) True trnam-cau_27
TU214009 other upstream 1165218 13239749 ~ 13243162 (-) False rpp21
TU214564 other upstream 2286405 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 2334195 14408726 ~ 14415069 (-) False rx1

Expression Profile