RNA id: XM_026930298.2


Basic Information

Item Value
RNA id XM_026930298.2
length 2450
RNA type mRNA
GC content 0.53
exon number 11
gene id si:dkey-181f22.4
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 665577 ~ 678091 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCCActccagcagccaatcagaagcgaCATAAACAAGTTGCGTCACTCAGCACGAGCGCGACGTGCTTTTCATTTCGCTTTGCGCGAGCCAGTGCGCGTCCCGGTTCTGAGCGCGAGCCAGTGCGCGTCCCGGTTCTGAGCGCGCGGTTCTGAGGGACGGGAGCAGGAATGGCCTCGGTGCTGGAGGAGGTGGCTGAAGCGGAGCTGATCCACGTGACTTTAGTCAGAAGCAGCGCGGGCGCGTGCTTACGGGGCCACCTGAAGAAATCCGCGCGCGCAGTCGCTCTCAAACTCCTGAGCACGGACAGCTGTGTGTCTCAGATGCAGGACGCGTTGGCGTggggtggagtgtgtgtggagcgaGTTCTGCAGCCTGTAGGTGTGTATCGGAGTCGTTTTCTCACTGGCCTGCTGTGGGACTGGATGCCTGAAGGATCTCTACACTCACTGCTGTATGAGACTCACCTGTACCCGGACCTGCCCCTGGTTCTCCGGTTGCGGATCCTGCTGGACGTGGCCGAGGGTTTAAACGTCCTTCACGCCGTCTCTCTGCCTCACGGTGCACTGAAGACCACCAACGTCCTGCTGGACCACCAATACCGCGCTAAACTGTGTGATTGGGGACAGCGGACGCTGGTAGACGTGAGAGCCCGTGTCTCTGCCGGCGGCGCTCCGTGTTTGAGAGACCTGGCTCTCCTGGCACCGGAGGTTCTGCTGGGAAACGTTCCGTGTGTGAAGTCAGACGTGTACAGTTTTGGTGTTCTGATGTGGGAAACTCTGAACAGACGACCGCCGTGTGAAGGTAAAGATCAGCTGCAGAACCTCGTTATGTGCACTCAGGAAGGGGCGGAGTCAGGTATGGAGATTAATCTGTTGCCCCCGGAGACACCACAAAGCCACGCCCTCACTCAGCTCATGATGAGATGTTGGTCTGTTGATCCAAACCAGCGGCCGCTGGCTAAAGAGTGTGTTCTGGAGTTCAGGAAGGTTCTGGAAACACTGGACGCAGGAGCTCATTGTACAGCGGTCCACCTGATAAAAAAGTGCAAGgagaGGGCGCTGCTGAGCTGTAAACACACGCCAGCCTGGGAGCTGCCCATCGAGCTGAACAACCTGGAGGGCTACGGTGGCTGCACAGGTCCAAAATACCTGATGTCTAAGACGATTCCAGTGATGGTTCCTTACTCACGCAAGCACGCCGCTCGAACACGCGAATCAGACGAGGCGATTCAGAGAGGAAGTCCGCCCTTTCCCGCTCCGGCACAGGCGTCGCCTCCGGCACCATGCTGCAGGGATGCCTCACACAGTCCGGTCAGTTTATCCAGCAGTAATCCTGGTGAGAGACGCTGCAGTGGAGTTTGGGGCGTAAAACAGACTCGAGCTTCTCCACCACCGAACACGCCGTGCAGCTCGCCGACATCGccgacacacacacctctacatcCCGCAAACCAGCCCGTGTGTCCCGTGTCCCCCGGCTGGACGTGCTGTCGGCTCCTGCAGGAGAGACGTGAGGCCATTGTGCACTACATGACCGAGGGGCGACTCAACAACCTGCTGGACGTGTTGCGGGCGAGGCGGGCGGTCACGCGCGAGGACTACGAGTTCATCACGGCGGCCATGACGCTGAGCGCACGCACACGCTGCCTCCTCGACATGTGCGCGTGTCTGGGGGAGAAAGTGGCCGTCCTGGTAGCCACCACTCTGGGTCTGGTTTCTGTCGAGGCCGCAAACAGACACGCCCGCTCTCGGATATCTCCTACAGGCCAGACGGGGTGAGGAGTGAAACCACTAAAGTGTTCCTTCGtgattgttattgttactgagTTCTCTAAGAAGCGTTACGCCCTTCGTTATAGAGACGGAGATGGATTTGATGTAAATGTAGGACTTGATCAGACGAGAGCTGCTTTGATCACAGAGCATTaaacatcatcagcagtgttcTGTGGAGGTGTTAAAATCTTATTCATCACCTTCTTAATGCTTTGAAGTAAATCTCAGAGGTCAGAGATCTTTTAATTACAACATAATTAAAAGAATGCATTTattcagttgtgtgtgaaaaatagaaaagtgTTTAGTTTCTATGGACAGTTTTTTCTGTTCGGCTGTTTCTGTTGCTTTTATGAATTTATCTGTGAGTTgggatttttgatatttttctcTGTAGTCAGGTCTCCAGTATTAAAGCATCGTATGCTGGCCAGTAGGACACGTCGTGCACGTTGCACAAACACGAGTATTTCCTCAGCTGGTAGTGGATTTTATCCTGCAAGTATCTTGTAACAAGaacttctttattttcattgttttgtacAGTaccatattaatgtttattgtgTTGCATGTGTGACACAgggttaataaaataatcaacaaaaagtGCTCATGTACTGTTTGTgattaataagttaataagtcGACATTAAACCAAGTTTAAACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206069 lncRNA downstream 96335 568413 ~ 569242 (-) True G174074
TU206042 lncRNA downstream 145604 506782 ~ 519973 (-) True G174054
TU205619 lncRNA downstream 209392 455864 ~ 456185 (-) True G173685
TU205566 lncRNA downstream 399039 263184 ~ 266538 (-) True G173639
TU205530 lncRNA downstream 478415 185451 ~ 187162 (-) True G173603
TU206125 lncRNA upstream 118303 796394 ~ 798832 (-) True G174127
TU206147 lncRNA upstream 145548 823639 ~ 823896 (-) True G174147
TU206150 lncRNA upstream 151845 829936 ~ 830269 (-) True G174150
TU206157 lncRNA upstream 184840 862931 ~ 953387 (-) True G174156
TU206208 lncRNA upstream 270382 948473 ~ 1001717 (-) True G174202
XM_026930651.2 mRNA downstream 5193 647059 ~ 660384 (-) True slc7a6
XM_034308418.1 mRNA downstream 26577 605769 ~ 639000 (-) True scube2
XM_034308477.1 mRNA downstream 63395 592803 ~ 602182 (-) True tmem9b
XM_034308877.1 mRNA downstream 80766 514156 ~ 584811 (-) True dennd2b
XM_026930625.2 mRNA downstream 154174 486645 ~ 511403 (-) True trim66
XM_034308774.1 mRNA upstream 11077 689168 ~ 710231 (-) True adgrg1
XM_034308880.1 mRNA upstream 230200 908291 ~ 913167 (-) True nrn1lb
XM_026930497.2 mRNA upstream 254140 932231 ~ 935096 (-) True thap11
XM_034308882.1 mRNA upstream 273294 951385 ~ 952329 (-) True LOC117598426
XM_026930712.2 mRNA upstream 320968 999059 ~ 1002638 (-) True fbxl8
TU205424 other downstream 631445 30281 ~ 34132 (-) True calca
TU206214 other upstream 283405 961496 ~ 963078 (-) True G174207
TU206257 other upstream 379565 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 969238 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1924323 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2076264 2754355 ~ 2756525 (-) True G175048

Expression Profile