RNA id: XM_026930313.2


Basic Information

Item Value
RNA id XM_026930313.2
length 1566
RNA type mRNA
GC content 0.41
exon number 5
gene id gcshb
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3144782 ~ 3152111 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAACTCAGTGTCCCTGTGTCCCCTGTGACCACCGAGAGCGCGCATCGTCGGGAGCGCGCACGGTGTAGTGCATCATTGCGGATCAGGGGGAAAGATGGCGATGCGCGCGACGCTCACGCGCTTTTCCTGCAACTTTTCAGTAGTTTTGCCTTCTCTGTCCAGAACTGTAGGGCACCAGATCCTAAGAAGGACGAACAGATCTATTTCACGGACTTTCTGCACGACCTCCTGGCTTTCCCAAGCTCTCAAGTTTACAGACAAGCACGAGTGGGTACGAGCGGACGGAGACATCGGTACAGTGGGCATCAGCGCTTACGCTCAGGAAGCTTTAGGTGATGTGGTATATTGTGGACTGCCGGAGGTTGGAACAAAACTTCAACCAATGGAGGAATTTGGTGTGTTAGAAAGCGTGAAGGCTGCTAGCGAGCTGTACTCGCCTCTGAGTGGAGAAGTCACTGAAATCAACACAGAACTGACGGAGAACCCCGGACTTGTCAACTCGTCCTGCTACGAGcgcgGATGGTTGATTAAGATGACGATAGAAAACCCGGGAGAACTGGAAGCCCTTATGGATGAAGCTGCTTATGAAAAATACATCAAGTCTCTGGAGTAGTTCAACTGAATTCCATGTTAAATCTGATTTATCTTTATGtatcaaaaataaacagattttagtGCTAAAAGCCCACTGCAAATTCTTATAATTAGAGAGATTGTGCTTATAAAATTCATTAATGTCAAGTTCTAGGTATTTTCACCAGATCATtgcttgtgtgagtgtgtaatgagactttaatacacattaatatgTTTGAAGGAGCTCTGGGTTGCAGGACCTGTAGTCCAGTTTTAGGTTCTTTGAATAAATTTGGACCATTGGCGCTTtagcagaaataaaataaagctgaaatttATTCTTGGTAACGGTATAAAACGTGTCTCCAACTTCATGtccagaatatttttttttaaataatttgctttAATGGAAGGACTCCAGTGAGGACACCTTAAAGCTTAATGTGTAACTCGGTGCTTTATATTTAGAAAAGTGGGATTATTCTTTTGATTAGTAGACAGCAGTTATGATCAGTAACATTTGGGAGAAATTTAGAGTTTCTAGACTGTTTTAACACATTAAGCCGAGTTCAGGTGTTTCCTTGTAATGGGTTTCTACAGAGCTGAAAACACATTTCAATATTTCAGCGTTTATGACAGACTAAGTCTGTGAGAGATTTGATTGTTGTTTTGGTACATTAATGCACGTTAAGATTTATTTTCACGTTACAGGATGTCACCAATACGCTGCCGTATTAATGAACGTGAACAAGCTTCGTATGTGAAAGTAAAACCCACATGAAAACTCGTGTGACATTTTTGTTCCCGCAGGATCCCAGGATTACTCCTTAGTCACTGGGAATTCAGAGAACTGAGGATAAAGTGCACTAACAGGAATCTTCTCTGAGTTCATTACAACAGTCGGTTACAGGAGAGATTAGAGCAGGTGTGATTGTTGTTCAGTAATTcagataataaatattacatattaaattcaTCCTTCAATTA

Function

GO:

id name namespace
GO:0006546 glycine catabolic process biological_process

KEGG:

id description
K02437 gcvH, GCSH; glycine cleavage system H protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207332 lncRNA downstream 137120 3007004 ~ 3007662 (-) True G175213
TU207149 lncRNA downstream 378177 2760210 ~ 2766605 (-) True G175046
TU207148 lncRNA downstream 384956 2756832 ~ 2759826 (-) True G175045
TU207219 lncRNA downstream 413909 2729695 ~ 2730873 (-) True G175110
TU207218 lncRNA downstream 419029 2725094 ~ 2725753 (-) True G175109
TU207459 lncRNA upstream 53146 3205257 ~ 3205466 (-) True G175329
TU207460 lncRNA upstream 54640 3206751 ~ 3206971 (-) True G175330
TU207463 lncRNA upstream 58036 3210147 ~ 3210404 (-) True G175333
TU207646 lncRNA upstream 359880 3511991 ~ 3512232 (-) True G175483
TU207665 lncRNA upstream 397754 3549865 ~ 3581971 (-) True serf2
XM_026930257.2 mRNA downstream 2785 3136436 ~ 3141997 (-) True rpl13
XM_026930842.2 mRNA downstream 16137 3075978 ~ 3128645 (-) True cpne7
XM_026930760.2 mRNA downstream 121302 3020554 ~ 3023480 (-) True zgc:162592
XM_026930686.2 mRNA downstream 136166 3003935 ~ 3008616 (-) True LOC113536623
XM_034308733.1 mRNA downstream 147674 2976459 ~ 2997108 (-) True dhx38
XM_034308871.1 mRNA upstream 3430 3155541 ~ 3164360 (-) True kars1
XM_026930654.2 mRNA upstream 3848 3155959 ~ 3167279 (-) False kars1
XM_034308872.1 mRNA upstream 3848 3155959 ~ 3167259 (-) False kars1
XM_026930806.2 mRNA upstream 17212 3169323 ~ 3219284 (-) False nfat5b
XM_034308870.1 mRNA upstream 17212 3169323 ~ 3189295 (-) False nfat5b
XR_003403704.2 other downstream 4621 3140070 ~ 3140161 (-) True LOC113536794
XR_003403703.1 other downstream 5875 3138827 ~ 3138907 (-) True LOC113536793
TU207151 other downstream 388257 2754355 ~ 2756525 (-) True G175048
TU207201 other downstream 541571 2602414 ~ 2603211 (-) True G175098
XR_003403705.1 other downstream 1497324 1647329 ~ 1647458 (-) True LOC113536795
XR_003403706.2 other upstream 149028 3301139 ~ 3301270 (-) True LOC113536796
TU207666 other upstream 417230 3569341 ~ 3572262 (-) True G175497
XR_003403696.2 other upstream 703080 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other upstream 703080 3855191 ~ 3909889 (-) False mical2a
TU207939 other upstream 840615 3992726 ~ 3996433 (-) True bola3

Expression Profile