RNA id: XM_026930344.2


Basic Information

Item Value
RNA id XM_026930344.2
length 4031
RNA type mRNA
GC content 0.56
exon number 16
gene id pde3b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 45726 ~ 96130 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCACTACCCCGAGGCTGAAATGGCTCCTGCACCCTGCTTAGTGCCCTACAGGTCCGGCAGAGAGCCGATCCGGACACGGCCATGAAATCATGACTCGCGGCTGCTCGGGTCGCTGTGAATTTTCGCCTCTAGGCGGCGCTACAGAGCTCATCAGcgctaaaacaacaacaacacttcaccttctttcttcctttgcagtcgagagagaagaaaaaaaatgcaggagcGCGTTTGAGTCGGTTCCGGAGCGCGCGCCGCCATGTAGCGAAACCGTCGATCGTCGGCAGGATGAAAGTTTGAGACGGGAACGGAAAGCgcgtgctgttttttttttggtcggGAGGAGGGAAAAACATGGCTGTGCGGGAGGAAGGCGAGGTTCCGCACGGTAAAGTCAGGCACGACGGCGGCGCGGAGAGCTTCAGGAACGGCTACGTGAAGAGCTGCGTCACGCCGCTTAAGCAGGACCCACCGCGGGGGCTTTTCTATAGCGCGTGCCGCTCGTGCAGCGACTCGGACTCCAGCTCCTCCGGGGTCGCACGCGCCTCCGCCGCCTACGCGGGAGCTTTCGCAGCGCTCGCGGCGTCCTTCTTCCTCTCGCGCCGCTTTCAAAGCGTCGAGTTGCGCGCGCTGCTGTCGGACGTCGCGAGCTCTCTGAGCCCGTTGTTCAGTATCGGGTGCGCGCACTTCTTCCTCACCTTCTACCTGCGCCGGCGGAAGCGCGAGAGCAGTCGCGGCTGGCTCGTGGCCCTGCCGGTCTCGTGCTACCTGGGGGACTTCGCGGCGCTGCGCTTCCTGCAGTGGGGATCCGGAGAGCAGGAAGACTCCGCCGCTGCCTCGCATCACGTGCACACGGCGGGCCGCCTGCTGTTCGTGCTCGGTTGCGTGGGCCTGCTCACTCTGCTCCCGACTCTCAAACTCCGGCACAGCGTGCTCGTGCTGCTTTTCGCCAGCGGCGCGTGGCTGCTCGCGCACACCGGCCTGAGCTGCGTGGCATCGTGGCTCAGGCCGCTGATCGCGTGCGCTGCCGCCGTCACAGGCTCGGTGCTCGGCCTCGGGTTCGACCGCTCATATCCGCCGAGGGAGACCGCCAACCGGACATCCGAGGAGCGCGTGCCGGTGGTGAGGCCGCGGCGGAGATCCAGCTGTGTGTCGCTCGGAGAGACTTCCAGTAGCTACTATGGCAGCTGGAAAATGCCGCGCAGACCGTCATTACCGTGCATCTCCCGGgagcagATGATCCTGTGGGACTGGGACCTGAAACAATGGTCCAAACCTCAGTATCAGggcTCAGTGTGTGGAGCAGATCTCTCAGTGATTAGTGATGTGAGGAATCTGATCTCAGACCTGCTGCAGGACTCATCTCTGTCTCCACACATCGTGTCGTCATTGCGCAGCGTCAGCAGTTTGATCAGCAGCGTCTCAGGCTCCTGCCGGCCGCGTCCCAATCCATTCACACCGTTCCCAGGGTTCTACCCCTGTGCTGAGGCAGAGGATCCGAGTGACAGAGCTGAGAGAAAGCCTGTGAAGggCCTGAGTAGTAGGAATAGTCTGCCCACTCCTCAACTGAGACGGAGCTCTGCGTcctcatccctctctcctctgGAGACACTCTCGTCCCCTCGCTGGGAGCGCAGTAATGGAAAGAGATCTCACACTGAGCTTAGTGCCGGCAGTCAGGGATCATTCTCCAACGGGCCAAACAGCAACCTGCTGACCATCCCGAAGCAGAGATCCTCCTCTGTTACACTCGCCTATGGCCACAACCTGCCCAGAAGACCAgGTGCGTCTCCGAGTCTGAGTCCGCTCAGTTCTCCAAGTCACAGCCCCCCGTCATGTCCGAGCTCATCGCTGATCACTCGTTCTCCGGTGGAGTTTCCCGACACGGCCGACATCCTCACCAAGCCCAGCGTAAACCTGCACAAAGCACCGGGGTTTTCGCTCAGCTCACTCTGCACCAGttgTGGGCGGCAGATACTGAAGAGCAGCTCTAACGCTGAGGTGGGTGACGGTCACATGACCTCGGGGCCTGACATGCAGAGAAGACGATCAGCTGAGGGAACGGAATACAGCAGCGATGGGCTGATCAGGGAGGAGAGCGGGGAAGTAGATGCTCAGGGAGAGGAAGCAGGACTGACTGCAAAAGCTAAAGAACGAGCTCagcatgaggaagaggaggaggaaaagcaAAGCACGGGTGTGCAGGAGACACCATCTCGTCCTGAGGAATTCAAGTTAGATCCTCTGCTGGAAGACCATGAAGCTCTGTTGGAGAAGCTCAACAACTGGAACTTCCAGATCTTTGACCTGATGGAAAGGACGGGAGGGAAGTCGGGACGGATCCTCAGCTATGTGGCCTACACTTTGTTCCAGGACACGGGTCTGTTTGAAATCTTCAAAATCCCCGTCCGGGAGTTCATGACGTACTTCTGTGCTCTGGAGAACGGCTACCGCGATATACCCTATCACAATCGTGTCCATGCCACAGATGTCCTTCATGCTGTGTGGTACCTCACCACCAGACCCATACCAGGCTTCCAGCAGATCCATAATGAACACgtgacaggaagtgacacaGACTCAGACAGTGGTATCTCTCCTGGTCGGGTTTCTTACGCTTTGTCCAAAAGCTCCTCCATCTCAGACAATAGTTACGGCTGCTTGGCCTGGAACGTCCCTGCCCTCGAGCTCATGGCACTATATGTAGCAGCTGCTATGCATGACTACGATCACCCAGGTCGCACAAACGCCTTTCTTGTAGCTACTAACGCCCCTCAGGCGGTGCTGTACAACGACCGCTCGGTTTTGGAAAACCACCATGCTGCCGCTGCATGGAGCCTTTTCCTGTCTCAGCCTGAGTTTAACTTTCTGTCCAACCTGGACCATGTTGAGTTCAAACGTTTTCGCTTTCTTGTTATCGAGGCCATCCTCGCCACAGACCTGAAGAAGCACTTTGATTTCTTAGCCGAGTTTAACTCCaaggTTACAGATGTGAATAGCCCAGGTATCGACTGGACTAATGAGAATGACAGGTTGCTGGTATGCCAAGTGTGCATCAAGCTGGCAGATATTAATGGACCAGCGAAAGAGCGCAAACTTCACCTGAAATGGACAGAGGGCATTGTGAATGAGTTTTATGAACAGGGAGATGAAGAGGCTCGCCTCGGATTACCCATCAGCCCTTTCATGGACCGCTCTGCGCCTCAGCTGGCCAAGCTGCAGGAATCCTTTATCACGCACATTGTCGGGCCACTGTGCAACTCATACGATGCTGCTGGCCTCCTCCCAGGTTACTGGgttgatgaagatgatgtgGATGAAGAAGATGGAGAGGAGGATGATGCTGAAGACACAGAGACTGACGATGAAGACCTTGATGAAGAGCTCCAGTTAAAGCCAAGGAAAAGCCGTCAGCGTCTGTTCTGCAGCATTATGCAGCACCTGACTGAAAACCACACGGCGTGGAAGCAGATCATcgaggaagaggagaagaacTGTGACCTGGGCCTTCATCAGCAGCAAGAGCAGCAGCAGGCAGACACATTGAACCTTCCTTCTCCCTCCTCAACCTCAGATGACATTCAGGTCATTGAGGAGGAGGCTGAAGAGGAGGAGCGACAGCAGGAGGGGGATTGAGTTGAGCCGATTGGCTGAGAAAAAACTAGGGGAGGGGCCTGAAGCAAACAATTGACTCTTTGCTCTTTCCTCTCCTGCatcagaacacagacacacagtccgAATTGACACCAGAAGATTCTGCCAGATCTCCTGTACTGAAATGAATCACTGTGACGCAAATGCAGTTCACATggtgttggaaaaaaaacaaaaaacaaactgaaaaaaggCCTTACTACTGTGAGAGCATCCTATGCACTTTCACCCCATGGAGAATGATGGAGGATGAGAAAAAGGgttgaaaaaaagacagaatgaaatAATGAACGAAACTCTCTATGGTTATTTGGCTGTGATGCTGCCTTGAAAGCAGAGCTCTTAACTCTCCTCTAGGTacttattacaattattt

Function

GO: NA

KEGG:

id description
K13296 PDE3B; cGMP-inhibited 3',5'-cyclic phosphodiesterase B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205498 lncRNA upstream 29377 125507 ~ 127757 (-) True G173573
TU205506 lncRNA upstream 42063 138193 ~ 139136 (-) True G173581
TU205512 lncRNA upstream 59412 155542 ~ 215461 (-) True G173586
TU205528 lncRNA upstream 87897 184027 ~ 185814 (-) True G173602
TU205529 lncRNA upstream 89321 185451 ~ 186441 (-) False G173603
XM_026930347.2 mRNA downstream 11560 30351 ~ 34166 (-) False calca
XM_034308875.1 mRNA upstream 171600 267730 ~ 272572 (-) True ric3a
XM_026930689.2 mRNA upstream 203094 299224 ~ 335808 (-) True lmo1
XM_034308876.1 mRNA upstream 352487 448617 ~ 470183 (-) True stk33
XM_026930391.2 mRNA upstream 377701 473831 ~ 480942 (-) True rerglb
XM_026930625.2 mRNA upstream 390515 486645 ~ 511403 (-) True trim66
TU205424 other downstream 11594 30281 ~ 34132 (-) True calca
TU206214 other upstream 865366 961496 ~ 963078 (-) True G174207
TU206257 other upstream 961526 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1551199 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 2506284 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2658225 2754355 ~ 2756525 (-) True G175048

Expression Profile