RNA id: XM_026930391.2


Basic Information

Item Value
RNA id XM_026930391.2
length 1895
RNA type mRNA
GC content 0.42
exon number 5
gene id rerglb
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 473831 ~ 480942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCTAAATCTCGTGTTGTGAAATCTTATCTGTTTCAGAGAGACTTCCTGATAACTCCTGATGTTAAACTCTCCACAGTGTGGGAGGAGAAAGTGGAGATCAGAGCGTTAATGTGCATGAGAAAAGGAGGGAGAACCTCAGAGACggagaggaaaacagagagaaaggttGTATTTCTCCTCAGCTGAGGAACACAGTGTTCGAGTCTCGGTCAGTTGTGCAGTCATGAACGACGTGAAGCTGGCTCTGCTAGGCAGCGAGGGAGCGGGGAAATCAGCGGTTCTGGTGAGATTCCTGACTAAACGCTTCATTGGAGAATATGCCTCGAATACAAATTCGTTATACCAGAAAAGGCTCTCGATCGATGGCAGACAGTTGAACTTGGAAGTCTTTGATCCATGCTCACAGAATGTGGAGAGTAGATGCATCCTGGAGGAACCGGTGGACTGGGCAGACGgctttgtggtggtgtacacCATCAGCGACCGCATGTCTTTCCTCAACGCTCAAAACATCCTGCAGCAGATCAGAGAGAGCCGTCGGGAGACCTGTAAAGGAGACATGGACGTCCCCATCTGCCTGGTGGGGAATAAGCAGGACCTCTGTCACAGCCGGCAGGTGAGCGAGGAAGAGGGACGTTCTCTCGCCCTGGAGCACAAGTGCGTCTTTCAGGAAGTGTCTGCTGCTGAGAACTACCTGGACATCGCCAACCTCTTCACCAGACTCATACGACACGTCATGGAGCACATGAAGCACAGATTCGAGCGCCGGCGCTACAGCGGCTCGAAATCCATGGCCAAACTCATCAACAACGTGTTTGGGAAGAGGAGGAAGTCTGTCTGAAGCACTTTACCGTGAAAGAACATGAGAACCTTCAGAGTGTTTGGAGTCTGGAACGTCCCCTAGAACCTGATGTTAACAGCTAGTGATGAGAACTCACCTGAGGAGAGGAACCCAGACAGCACTTCCTACTCTCTTCAAACATTTAGAGCCATTAAAGCTTCTTCGGTTGTTCCTCTAGGTTAAAGGTTTTGTGTAGAATCTTGCAGTAGACAGAGAAGAAATAACAAGTAGAACTCTTTAGGAGGCTAAGATCccttaattaataataatatccctTAATAAtcccttaattatccaacaaaACCTTACAGAaccactgaagaacccttttttctaagagtgtaccaagtaccaagaggttaaatattaaactcctgacaggttctacgTCATAAAACACTTACCcacttaatacacacactcttaaaaaggttctttaagggttctttaagggttctttaagggttctttggataattaaataatttaacactttGACTCTTCTAGATCCAGAGGGAGAACCGAAGAATCCTTCAGGGTTTTAGATTTTGGAGGAGTGTACGCTGCTGAATCGCGGTAGCTACACAAGTTTaaacagaaagtaaaaatgaaattgaagaTTATTTCAAAGCCAtcacatttattcataaataatttaaactttattaCTACCCAAGATAAGGACCATTTTTTCTTCTCCACTGTAAACTACGGCATGTAGAAACATTCACAACAGCGTCTGAGTGAGTTCTGTCTGTCTGGAGGAGTGGAGAAGAATTAAACAccaatttattttaatctcaTTCAAAAGACTtctaaaataaaccaaacatcTGAATTGaactattaataaaacatatctGTGTGTAGTTTAATAAGATTTATTCCTATTATTAAAAAACTCtattaaataaattgtgtaatctgcagtgatttttgtgattaatATTTAATCCTTGGAAGCACAGTGGACATTTCTGGTCTTTATTTCTTGCCTAATTTAGTGATTCACTTTGAAGTTGTTCTTCTTTTATCCTGTTAATGCGGTGGat

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205619 lncRNA downstream 17646 455864 ~ 456185 (-) True G173685
TU205566 lncRNA downstream 207293 263184 ~ 266538 (-) True G173639
TU205512 lncRNA downstream 258370 155542 ~ 215461 (-) True G173586
TU206042 lncRNA upstream 25840 506782 ~ 519973 (-) True G174054
TU206069 lncRNA upstream 87471 568413 ~ 569242 (-) True G174074
TU206125 lncRNA upstream 315452 796394 ~ 798832 (-) True G174127
TU206147 lncRNA upstream 342697 823639 ~ 823896 (-) True G174147
TU206150 lncRNA upstream 348994 829936 ~ 830269 (-) True G174150
XM_034308876.1 mRNA downstream 3648 448617 ~ 470183 (-) True stk33
XM_026930689.2 mRNA downstream 138023 299224 ~ 335808 (-) True lmo1
XM_034308875.1 mRNA downstream 201259 267730 ~ 272572 (-) True ric3a
XM_026930344.2 mRNA downstream 377701 45726 ~ 96130 (-) True pde3b
XM_026930347.2 mRNA downstream 439665 30351 ~ 34166 (-) False calca
XM_026930625.2 mRNA upstream 5703 486645 ~ 511403 (-) True trim66
XM_034308877.1 mRNA upstream 33214 514156 ~ 584811 (-) True dennd2b
XM_034308477.1 mRNA upstream 111861 592803 ~ 602182 (-) True tmem9b
XM_034308418.1 mRNA upstream 124827 605769 ~ 639000 (-) True scube2
XM_026930651.2 mRNA upstream 166117 647059 ~ 660384 (-) True slc7a6
TU205424 other downstream 439699 30281 ~ 34132 (-) True calca
TU206214 other upstream 480554 961496 ~ 963078 (-) True G174207
TU206257 other upstream 576714 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1166387 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 2121472 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2273413 2754355 ~ 2756525 (-) True G175048

Expression Profile