RNA id: XM_026930453.2


Basic Information

Item Value
RNA id XM_026930453.2
length 6430
RNA type mRNA
GC content 0.42
exon number 7
gene id map1sa
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12398946 ~ 12427447 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCATTCGACTAAAACTTCGCAACATGGCGTCGCAGCGCATCGACGGAGTGAAAATGATGGAAAACGCGAGCGCAGCTTCATCCCATCCCGGTTTTAGCAGCGATAAATATTCTTTACTGGTCGTGGTCGGGGAACACACCGCTGCCGGCTCTGTGGAGTACCTAGTTTCGGAGATTGAACGAGGTATTCGCTCCTGGGACATTGACCTGTCCTCCTGTAATTTGGATGAGCAGCTCAAACTCTTCGTCTCCAGACACTCCGCTTTCTTCTCTGAGGAGCTCAAAGGTCAGCGGACACTGCAGCACAGTGGAGATGTTCTGGAGACCCAGGTGGTTGTGAACCCATCCCACAGTTTGGTGTGTTCAGAGGTCCGACGGCTTATTACCGACGTGTCTCAACACAAGCTGCTGATTCTCGCTGGACAGTGTGTGGAAGACTCTGGTGACCTTGTATTACAAACTGGTTGCTTTTCCCTTAATGACTTCATCCAGATATTTGCTCATGAAGAGATTGGTGAGATGTTAAGCTCTGCTGACCCTACACACAAAGCAAGCCTCACACTGAGTTGCCCCATATCTGGATCATGGAAGAGCTCCATGTTGGAGAAGCACAATTTGCAAGACTTTATTGAAATCAAGACCAACCCGCCATCAGTGCTGCCTGAGATGGAAGGTCTTCAGGAGTTTACGGAGTATCTTTCAGAGTCTCTCGAACCTCGGTTGGCTTTTGAGCTTCTTGAGCCTCCTAGCACGGTTGGCTTTCTAAAACTGTCCCGCCCCTGCTGCTATGTGTTTCCTGGTGGTAGAGGGGACTCTGCTTTCTTTGCTGTGAACGGATTTAACATCTTGGTCAATGGTGGGTCTAATGCACGCTCTTGTTTTTGGAAACTGGTGAGACATTTGGACAGAGTGGACTCCATATTGATGACACATATTGGTGCGGATAACTTGCCGGGTATGAACAGCTTTCTCCGGAGAAAAACAGCAGAGCAAGAAGAAGAGGATTCAGCTGGCTCCCAGAGCAATGATGACTGGCAAAGGAACTTAATATCTCCAGAAATCGGGGTTGCATTCCTTAATGCTCCTGAAAGGCTTAAGACTCTCCAAGGTGATCCTAAGGTCTTGCGCGGTTGTGATCAGGTTTCACTTACACTACAGCATCTAGAAAGGTTATCTATCTCTCCAGAATCCCTCAGTCGTCCTAACAGTCCAAGTATTGAACCATTAATACTCTTTCAGAAGATGGGCGTTGGTCGTTTGGAACTGTATGTTCTAAATCCTGTCAAAGGTAGTAAAGAACTAGAAACTTTTATGCAAAAGTGGCCCAGTAGTGCCTCTGGTGTGAAAGGTTCAGATATTCCTTTACCCTGCCTGGTTTCAATATGTGCACTGCTGGTATGGCATCCTGCTAGCCCTCAGGAAAAAATTGTTCGTGCTCTCTTCCCTGGTTGCACACCACAGGCAAAGATATTTGACGGGTTGGAGAGGTTGAAACATCTAGACTTCCTTAAGCACCCAGTGGTGAGTTTACAGGATCTTGAATCACCTAAACCTGATAAGCAGCCAAAGCGTACAGAGAGCAAAGAGAGCCTTAAGTCTCTCACCAAAGACTCAAGACCTGGGAGTGCCTCACTCATCAAAGACAAGGTAAGCAGAGTTGACATAAAGAAACAAGACACTAAAGTGAAAGCCAAATCTATAAGTGAAACTGGccaaaaagaaagtaaagaagtgGAAGAAAAAGCAAAGCCAAAAGATGATGCAAAACAGAGACTCTCTAAGCCTGAAAAGCAATTGGTTAAAAGGGAGCCCgtgaaagaggagagaaaagaagtaaagaagaaagaggaacGACCCTCGACAAGTCTTTCTAAGAAAGATGAAAATattgagaaaaagaaggagCCCATGAAGAAAGACGTGGGATCCAAACCTAAAAAAGATATTAAACCTGAAATAAAGAAGGAGATTAAGAAGGAGGTTAAACCAGAGGAGAAGAAAACGACAACTAAGCCAGTCATTAAGGATGCAAAGAAAGCATCTGGAAGTGCATCTTCCGACGTGAGGAAGTCATCAGGCAAGAACGGGTCATTAAAGAAAGATTCCACGATCATTAAAAAGGACAGTTTATCTAAAGGAATAAAGTCAAAACCAGAGAATAATGAAGAGCACAATCTGAAACCAAACTCTGATCAAAAGTTGTCTGAGGTTATTGGCGCAGACTCTGAAAAGTTAAAATTGGAAAATCGAGTATTGGATGAGGAAGGGAATTGTTTAGGTTCTGCAACTAAAGGCGCTGAGCCAGCTGAGAAAGATCAACATCAGTTGAACGGAGCACAATGTGGAACAGACTCGTCGGAAACGCCAGAGAAATTTCGATGTACAGAGACACTATCTGTCTCAAATTCTGCTCTGGGATCTCCTTCACCACTTGCAAAGACTCCAAAAAGTGAGAAGAGTGTCAATTTTGATCTCACACCAATGGCGCATGGGTTATTAGATGGAATCCTTGAAACAGTCTCTCCAGCAAACAGTGCAGGACAGGCATCATTCTGTCAGTCTCCTGAAAATGATCATCAAGGCACTGGTCCTGAAGATACTCATGAGGCAGTTAGCTCAAAAAGTCATGTGACTGCCAACTCCACATCTTTTAAGGACATACTCCCAGATGCCTCGTCCACAGTCACGTCCCTGCCTGCTGAGGAAGGTTCTCCACACTCAACTGAAGTTGATAATTCTTTATCAGTTTCTTTTGAGCAAGTAGTCCCCCTTGTTGTTCAATCAGAAGACAGTGTATACACCAATGGACATGATTCAAAAGCGCATATGTCGTTACCTTTAATGACATTCCGTAATGGTGACCAAAACTGTACTGGGTCTGAGAAACATGTCTCTGGCCCACAGGCTCTTTTCGCTGATATCCCACCTCATGATGTTGACCTTTGTTTGGTGTCACCTTGTGAATTTGAGCATCACAAATCTCCAGACAACCAAACAGGGTTACCTAGCCCAGGTGCTCACAACTTCTCACCTGAGAGTGACCAGTCTCAAGAGCCTGCTAAATCACTTTCGCAGTGCAACAATAACAGTGTTTGTTACTCTTCACAAGGCCAAGAGACAACGCCAACCTCCGTCAGCGACTCTCTTCCTACAGTCTCAGACTCTGATGTCCCGCCAGCTACCGGAGAGTGTCCTTCGATTAGCGAAGACTTGGATTCTGATGAGGAGTCTGCTGACCTTTTCCCACCCCATCATCCACATGATCATCCCAGCAGTCATTTCTTTCACATGGACCCGGCACATTCCTCTCCAGATCCCCCTCCAGCACCAATGAAGGACTTGCCCCCACTCCCACCTCAGCCTGGCGCCTGCATGGTTGACCCTGAAGCTGATTCCCAAGGCAAGTCTTCGAAGAATGTAGCTGCGAAGGccaaaaaaacagcagcttcTGGGACACAGAAGATGGCAGCTGCAAATACTTCAGCACAAAGTAGCAAGACAAAGGCTGGTTCTCAGGCAACAACAAGTGGTACAATTAGGTCTTCGTCAAGCTTGGATACAAAGTCTGCTTCACGGAGTACCATCGGTAATGCAAGACCAGTGTCAGGAAGTGCAAAACCACAATCAGGTCCAGTGGGTAACAAGTCAAATGCTGCATCAGTTTATCTGGACCTAGCATACCTACCCTCTGGCTTTGCAGCATCTACAGTTGACGTGGAGTTTTTCCGCCGTGTGCGCTCTTCCTGCTATATAATAAGTGGGGAAGAATCGTACAAGGACTCGGTCATGAGGTCCATCCTTGAGTCACTGTTAGAAGGCAAGGCGGCCTGGCCAGACATACAGGTCACCCTGATCCCCACTTTTGATTCACTGACGATGCATGACTGGTACCAAGAGACGcatgaaagacaaaaagaactAGCGATAACAGTGTTGGGAAGCAACAGTACCGTGGCCATGCAGGATGAAACATTCCCTGCCTGCAAAGTGGAGTTTTGAATGGGAAGTGGGGAGAAAAAATCTTACGAAGAAATCACTCCTATTTTAATCACTCGAGCACTTAGGTCAATTCAGCTGTAACATTCATAGAAATTTTTGTTCAAAGCTTAGTGTCATTTAAATAACTGCTCAGATATGCGTTAATTAGCATAAGCTCTGAGaattctctaaaaaaaaaatactgtgaatCTCCATTAATGAAGATTTACAAAACTTAATGGTAGTATGCTATAGATCTTGTGTGAACAAAAGGAGTAAAGAAAGGTTGgggattttgtttgttttttctttgtagtGGTGAAATATTGATTGTTTTAACAGTCCCAAGCTGTATAGCCTTTATAGATCATGATAAGATCATGTTTCTCATTTCCCTCATTACTACAGTCTGTTGTTTTGCATGGTTGCACAGTTTGGATTTTCAGCACAAATGGGGAAGCACAAAACACAGTGGACATTGTGATGGACAGGAGGAGGCTAGACGGTCATTGCGCCGGTCCCAcaggcttatttttattatctctaAATGACAAGTGTTTTGTTGTGGGCGTTTGTTATAATcaagcaaataatttttttcatgttttaccCATTTCCTGAACCATAATGACTGATTCCTCTGTATAAACGAGATCACAATTGCATGTTTGAACAGTTTGATGTCagtatttgtttcattttcacatttgctGTTGATGGTAATCATGCACCACACGCAAGCACCAATGTTTAGTAACTAGCTAGTTGTTTACTGCAGCAGTGgatttatgctgcattcgatTAAAGCTTGTAACTTGAAATTTGCAACCTCAAaccaggaaaaaccaaagaaaacacccccttAACTTAGAATTCCTACTTGGAAAGTTAggaaggtctcctcaactcAGCATATGACATCAAGAGTAAATAGAAATAGCACTTCTTTAAAAGATTTTGTAGTACATAAGTTTAATCAACATAAACAACTTAAATCTGTAAGACTGACCATACAGTTCACTATTTTGAGgaagtaaatacatcataaactcaTGATCAGTTTtctgttagctggctagattgttgctaacaaaacacatgTCCATGGTTTTTCTTTATAGCTCAAACGCACCGAGCTTAAATATTACGCAATTCTGAATGCAGACTTCCCATTTCCGAATTAAGTCGAACGCAGCATAATTGTAGTCCAGGACTAATTTTATCTAGTGACGGTACACTGTGagccaagtgttttattaaaatatcatgtatattctttatttttacatttcagaaaCATGTTCTGTGTTTTGATGCATGGTAACGAGACACTAACCCAAGGAATCTGTTAATTACTGTTTGCTGGATTAAAAATTCCATATTTTGGTTCAGTATATAGTATGACAAAGTCACTTGGAGCTCTTTCAGCATCttaaaagatttctttttttttttcaaaaataaaatgtacaaaatgaatGCTTTTCCCAATTTGTAATCAGCCACCCATGCTTTAGTTTCGCATTGGATTTACAAAGCCAATGTAAACAACAAGATGGCAGTGTAGACACCATTTTGCTGAGTTACGGGAAAGACCCATCtcagctcagctagttagcagtCTACAAAATGACAAGTGCAATGGCATTGGTGGTGATATTAGCATTAAATTTGAAGCTTTCCAAGCTGATCCATTTGAGCAGAGTGCACAGATGAAGAGGTAAGAGaactggacagactaaaggattaaagtgctgctgcatggCTTTCTctaggtagagatgaagtgagggaACAcagcaccactatcagcaggtgaAAGTggaaatagaccaacatgtcattGATGGAAGTTTAAACcaaaactcagaatttcataaaataaatctttgacACCAAGATTTATcagatgttaattataaagattaatattaatgtcattcagggtggattttatctttaattcaggaaaaaaaaatcacataataaAATGCCACGTAATAGTTACATTATTGaaatttttcagtgttaatcaAAAATGAATTTTGGGATTCAACTCATTACTTTTAACAGTGGATAGTTTTTTTGTGCTTCTGTACCATTTGGCACACCATTGAGACAATGGAGTATGTTGAAAAAGATTGCTGTATGTCTGTCTGATTATGTGATGGTTATTGGAAGACTAAGGAGTGTGGAAGTGGATGCATTGAGCATCCTAAGTAGTGCACTTCTAGAGGAGACACTTGCAAATCCGgcagcttgatttttttttccccccaagtgTGTGATGTTGAATTACAGACCACTTAGTCAAGTCCACAAGCCTTAAACACTATCAAATCCAGGTTGGCTGAACAAGTCAAATGCTTCAGATTCAAGATTTGCATATTTGCAAAGTGGGTCATGTGTGAGTGAAAATCCATTTGCATTAAAGCAGTCTGCACTACTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213439 lncRNA downstream 32845 12364099 ~ 12366101 (-) True G180361
TU213324 lncRNA downstream 98081 12174862 ~ 12300865 (-) False G180273
TU213487 lncRNA upstream 59228 12486675 ~ 12487417 (-) True G180387
TU213492 lncRNA upstream 80494 12507941 ~ 12508232 (-) True G180392
TU213546 lncRNA upstream 148514 12575961 ~ 12619651 (-) False G180429
TU213549 lncRNA upstream 151271 12578718 ~ 12619651 (-) True G180429
TU213550 lncRNA upstream 152054 12579501 ~ 12584770 (-) True G180430
XM_026930471.2 mRNA downstream 3049 12388456 ~ 12395897 (-) False ifi44g
XM_026930470.2 mRNA downstream 3049 12388456 ~ 12395897 (-) True ifi44g
XM_034308852.1 mRNA downstream 11071 12373235 ~ 12387875 (-) True mfsd14a1
XM_026930477.2 mRNA downstream 43022 12353145 ~ 12355924 (-) True lsm7
XM_026930460.2 mRNA downstream 45937 12334202 ~ 12353009 (-) False tmprss9
XM_026930796.2 mRNA upstream 4412 12431859 ~ 12434169 (-) True cart1
XM_034308404.1 mRNA upstream 8650 12436097 ~ 12473448 (-) True osbpl1a
XM_026930505.2 mRNA upstream 51949 12479396 ~ 12484051 (-) False lrrc39
XM_026930504.2 mRNA upstream 51949 12479396 ~ 12484050 (-) True lrrc39
XM_026930292.2 mRNA upstream 60761 12488208 ~ 12495668 (-) True dbt
TU212758 other downstream 894984 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 983506 11409092 ~ 11415440 (-) False G179803
TU212647 other downstream 1152641 11243975 ~ 11246305 (-) False nppc
TU211855 other downstream 2583721 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 2875616 9522416 ~ 9523330 (-) True G178942
TU213621 other upstream 289914 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 808956 13236403 ~ 13236475 (-) True trnam-cau_27
TU214009 other upstream 812302 13239749 ~ 13243162 (-) False rpp21
TU214564 other upstream 1933489 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 1981279 14408726 ~ 14415069 (-) False rx1

Expression Profile