RNA id: XM_034308688.1


Basic Information

Item Value
RNA id XM_034308688.1
length 4734
RNA type mRNA
GC content 0.44
exon number 16
gene id tmprss9
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12334202 ~ 12353009 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTACACACATCTCACACGTGAAGTGCACGTGGTTTTTCCATAAGGGGTGTGTCGAAATAAGAGGTGGTGTGTTCCAGATATTGAAGAATATAATCCATCTTTTATGATGTTTAGTAACGCAGCacatgatgataaaaaaaaaaaaaattgggaagCAGCTTGTCATTTAGATGTTTAGAGACAAAGCCTGCGTGAGTGCTAAGCtcttaaaagctttaaaaacaaatagagGCATTAAAGTAACTGAGGTATTAATAAAGTAAACCTTTTGAGCACTCGTTTAAATCCACTccacccctgtgtgtgtgtgcacatgtattTATCTCTTTGTGAGGACCAGAAaggagtgtagtgtagtgctaGTGTAGTATCAAATGTCCTCACACAGTCGCAATGGGGATGTAACTGAAggtgaatacattatttgtgAATGAACTGATAAGTGTCAGTGTTTGTATTTAATGGACCCTTTAAAAAAGTAAGATTTAAGACACCCATTTGTGGATTAATACTGCAATCTGCTATATTCAGAACGTTTCAAGTCCATTTTCCCCAGTTCTGATCTAAACACATTCCAGTACTTCAGCTCAGAAAATCATAGATGTCCAGAGCTAGACCATATTTGTATGGCTAGTCTCTGAATTTGCTAAACTTATTAACAAGATTTACATTCAATTATTTCTGCATGATTAGAGATCAAAGCAACATGTTAAGACAGGTTGACTAATCTTGTTCATCTTTGGTCTTTATCGCGTTCCATTGAAATCGATGGAATTACATTACAAATTTAAAGTTACAAAGTTGTTAAAACATCTTTTTACAAACCAAAAGCTACATATCAACTAAAATCAAATTTTATCAAGTAGAAAATAATTCAAAGGGAATTCAGTTTGCTGTTAACTGTGCACCACCATATTGTTGTAACATTGGCTGTGTTTGTCAGACAACTCGGGCATGATGGATATTACCCAAGTTCCCAACttggaattctgagttgaatgACTGTTCCGTTGACTCTTCAATGCCAGGATTGGGTTTTCCAagtacaatggattgcagcaTACAGCTgaatatggatatttggagcaataAACAGATACTGATGGTTGGATGGTTGGGTGGATGTTGTGACGTGGGAAAAAAATAGTTTCTGGTAGTATTAAAATTAGCTTTAATAACCAGGCTATCCTGACTCATGGCTAACAAGCTAAACGTGCTTCCTGTTGCTGCTTCACAACTCCAGGTTCCCAGGTTCAATCAttagctcaggttactgtctttatggagttccacatgttcttcctgtgacTATGGGTTTTCTCCAcgttctctggtttcctatcacctcccaaaaacatggtcCTGTTACAGGATATAGTGAGTGAGTGCGATTATAGATAGTTACACCTCTAATACTcacaaaataaatggaaaaaaatgcagcttttatttgaaaaactaaaaagaCCTGGAATGTTTCTTTATGGTTACAGAGGTTAAGCTTAAGTTAAGATTCAGgggtaggcatagcattaatgaGCTGCAGTAATTATGgtaatggaaggtcctcacaaagatagtactaagattagtgtgtgtgtctagttTAAAGTTGTAAGATGCTCCTGTTGCTTTAGACGAGCTTTAGATGAGCTTTAGACGAGCTTCAGATGAGCTGAACAGGTGGCTGTAGGAGCTCGGGCTGCAGGGAGGAGGATGCAGGATATCTGATAGTCTTGATTGTCTCACTTAGTTACACACCCAAAAGAGGGACTGAACTTAAAGGAGTGGTTTTAGCGTTTCACCACTTTTTTAACAAGAGGTGTCGACTTCAATCTCGAGCGTGAGCCAATGGTCTCAGAGGTTCAGATTTCTGTAGACTAATAAAGAAATGAAGCAGCAGCAGAGTAAGTGGCCCAAGGCTGATCGTCCTCCTGCTCCACCCTCCACTGTGTGCAGATACGTTACACTCAGCACCATCTTGGCGATTCTCATCATCTGTGCTTTAGTGGGTGTTGTGATAGCGTACACGGTGCAGAAGGAGCATTACTTCATGGACACGGTGGAGTTAAAAGGCCTACAGTACAAACCTGAGCTCAAGGATAAAACATCTgcgttttttttaatcctgacaGCCACTTTGGAAACAAAGATCCAGAATATTTTCCTTGCATCATCATTTGCACCCCATTTTGTCTCCTGCCATATCGTTGCGTACGGgaaCATCAGTAATAACGTGATGGCGACGCTTCGTTTGGTCTTCAGAGTGGCCAAATTTCAAGTACAATTTACAGAGTACACAGACCGTTTCCTCCAGGAGCAGATTCAGTACGGCTTTCAGGCTTTAGTCAGTCCAAACCCGCTGACTATTCCTGAGTTTGGAGAAATTCAGAGCATCGTCCTTCTGGGTGCTAGCGAAAAGTCTTTGTATGTAATCAACGCTAATGCAGGTAGATGTCCTGATGACACATTTACCTGTGCCAGTGGGGAGTGTGTGACTAAACCTAATGCTGAGTGTGACTCTGTGTCGGATTGTGCTGATGAATCAGATGAGGCATACTGCTCGTGTGGCAGGAAGCTGGTGGTGGACAGTCGGGTTGTTGGGGGTGAAAACGCCCAACTTGGTGATTTGCCCTGGCAGGTGAGTCTGAGACTCCACGGCCATCACACCTGCGGAGCCTCCATCATAAACCGCCACTGGCTGGTCAGTGCTGCACACTGCTTTGAGAGTAAAAACCCGAGGGACTGGACAGCGCTGGTCGGAGCGAGTTTAGTGAATGGTGTGGAGAAAGGAGCAATCACAGTGAACATCAAATCTCTGATTGTCTCTCCACATTATAACCCCATGAACTCAGACAGTGATGTGACTGTGCTGGAGCTGGAGAAGCCACTGACTTTCACTCCTTACATCCAGCCCGTCTGCATCCCATCCTCATCTCACATCTTCAGTCCTGGACAAGACTGCATCGTCTCTGGCTGGGGAGCCGTCAAACAGGACAGCAGCAAGTTGCCTCCTACTCTCCAAAAAGCCTCAGTGAAGATCATTGATTCGAACGTGTGTAACAGTTCGACCGTATACAGAGGAGCCATCACCAATAACATGATGTGCGCTGGCTTCCTGCAGGGAAAAGTTGACTCCTGCCAGGGAGACTCAGGAGGTCCTCTggtgtgtgaaagcagccctGACCGCTTCTTTCTGGCGGGTATAGTGAGCTGGGGAATGGGCTGTGCGCAAGTCAATAAGCCTGGAGTGTACTCCCAGGTCACTGTGCTCCGCAACTGGATCCTGAGCCATGCCGACCCCAGTAGCACTCAGGACAGACCAACAGTTCACAGCGCAACAAACACTGCAGTCCTCCGTGCTAAGGCAGTCACTTCAACTCCTGTGGTGACTGGTAGGAATACCAGTACTGGAGCTGTAAACTGCAGCGGAAACTTTAACTGTGGCGCAGGAGTGTGTATCAGCAAGATCAACCCTGAGTGTGACCGAGTCGCTGACTGCTCCAATGAAGCCGATGAGAAAAACTGTGACTGTGGCCAGCGACCTGAATTCAGCCACCAGAGAATTGTGGGAGGTGTGAGTGCCCGTCGAGGGGAATGGCCATGGGTGGCGAGTCTGCAGTTCCAGCGTTTACATCGCTGTGGTGCCACGCTTATACACTGCAAATGGCTCCTTACAGCTGCTCATTGCTTCAGCAGAAAGGAGTCAAACCCCAGTGGCTGGACGGTGAGTTTAGGTTCGGTGCTCCGGTCCGGAGTGGGAGCTTTGATCATCCCAGTGCAGAGGATCATCCAGCATCCTGCCTTCAACAGCAGCAATATGGACTTTGATGTGGCTCTGGTGCAGCTCTCGATCCCGGCGCCGAGCTCCTACACCATCCAGACGCTGTGTTTGCCCTCCCCAACACACAGCTTCTTCAAGGGCACAGAGTGTTACATCACTGGGTGGGGCTCAATGAGAGAAGATGGAAAGCTAACTAATCAGTTACAGAAAGCTCAGGTTGGTATAatagaccaatcagaatgtCAGCAGTCTTACGGCAGAAAACTGACTGCCAACATGATGTGTGCTGGATCCATGGAAGGCGGCATTGATACATGCCTGGGAGATTCTGGAGGCCCGTTAGCATGCCGCCAGCCCCGGGGCCGGTGGTTCATAGCTGGGGTGACCAGTTGGGGTCGAGGCTGTGCTCGAAACAGATTCCCGGGGGTTTACACACGTGTCACTGCCATCAGGGAATGGATATCAACATACCTCCCATTTTAAAGATGCTTGTCTTCATATGGACTATTACTTGTGCATACTTACttgaaaagttacatttttattttgtgtatttattattgcttatgccaaaatgaaaacttttgacTCTACTGGAGCTTGAGAACATTAAAGATTGACCTCATGTGGtgagttgtattttttttctttttacaaataTCCCATTAGCCAAGTCCAAATAAGCATGAAATCAGTAGTAGATCTATTTGGTCTGATTCGGTTTTATGCTGCACAAATTTAAACACATGAAAAGAACAAGCAAAAAAGCACATCTACATACTTACATCTAACATAGCTGGGATGAATCAATGAATGCTCATATACAATGCTCAAATACAGCACTTTAACTTCTCCAGCAATCAGTGGAATTATAATTGGAATTGTGTTCAGCGCAAATCCTGGTcacctctgccaggaggttacaACCTTCCAGATAATGACCCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213324 lncRNA downstream 33337 12174862 ~ 12300865 (-) False G180273
XR_004579081.1 lncRNA downstream 85089 12239119 ~ 12249113 (-) True LOC117598410
TU213325 lncRNA downstream 100388 12189228 ~ 12233814 (-) True G180273
TU213322 lncRNA downstream 100388 12206459 ~ 12233814 (-) False G180273
TU213329 lncRNA downstream 249885 12075238 ~ 12084317 (-) True G180277
TU213439 lncRNA upstream 11090 12364099 ~ 12366101 (-) True G180361
TU213487 lncRNA upstream 133666 12486675 ~ 12487417 (-) True G180387
TU213492 lncRNA upstream 154932 12507941 ~ 12508232 (-) True G180392
TU213546 lncRNA upstream 222952 12575961 ~ 12619651 (-) False G180429
TU213549 lncRNA upstream 225709 12578718 ~ 12619651 (-) True G180429
XM_026930464.2 mRNA downstream 9835 12311606 ~ 12324367 (-) True enc3
XM_026930469.2 mRNA downstream 268403 12062995 ~ 12065799 (-) True s1pr4
XM_026930466.2 mRNA downstream 302196 12020412 ~ 12032006 (-) True ncln
XM_034308561.1 mRNA downstream 302303 12020412 ~ 12031899 (-) False ncln
XM_026930475.2 mRNA downstream 353542 11973681 ~ 11980660 (-) True LOC113536502
XM_026930477.2 mRNA upstream 136 12353145 ~ 12355924 (-) True lsm7
XM_034308852.1 mRNA upstream 20226 12373235 ~ 12387875 (-) True mfsd14a1
XM_026930471.2 mRNA upstream 35447 12388456 ~ 12395897 (-) False ifi44g
XM_026930470.2 mRNA upstream 35447 12388456 ~ 12395897 (-) True ifi44g
XM_026930453.2 mRNA upstream 45937 12398946 ~ 12427447 (-) True map1sa
TU212758 other downstream 830240 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 918762 11409092 ~ 11415440 (-) False G179803
TU212647 other downstream 1087897 11243975 ~ 11246305 (-) False nppc
TU211855 other downstream 2518977 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 2810872 9522416 ~ 9523330 (-) True G178942
TU213621 other upstream 364352 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 883394 13236403 ~ 13236475 (-) True trnam-cau_27
TU214009 other upstream 886740 13239749 ~ 13243162 (-) False rpp21
TU214564 other upstream 2007927 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 2055717 14408726 ~ 14415069 (-) False rx1

Expression Profile