Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026930475.2 |
| length | 1175 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 6 |
| gene id | LOC113536502 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 11973681 ~ 11980660 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| K06562 | LAMP3, CD208; lysosomal-associated membrane protein 3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU213015 | lncRNA | downstream | 84532 | 11862989 ~ 11889149 (-) | False | fxr1 |
| TU212928 | lncRNA | downstream | 195936 | 11728277 ~ 11777745 (-) | True | G179972 |
| TU212779 | lncRNA | downstream | 411338 | 11558919 ~ 11562343 (-) | True | G179827 |
| TU212764 | lncRNA | downstream | 441648 | 11529623 ~ 11532033 (-) | False | LOC117598402 |
| TU212763 | lncRNA | downstream | 460008 | 11511099 ~ 11513673 (-) | False | LOC113536577 |
| TU213091 | lncRNA | upstream | 15510 | 11996170 ~ 11996383 (-) | True | G180111 |
| TU213098 | lncRNA | upstream | 39753 | 12020413 ~ 12021392 (-) | False | ncln |
| TU213099 | lncRNA | upstream | 39753 | 12020413 ~ 12022163 (-) | False | ncln |
| TU213101 | lncRNA | upstream | 39944 | 12020604 ~ 12021392 (-) | False | ncln |
| TU213112 | lncRNA | upstream | 72621 | 12053281 ~ 12054861 (-) | True | G180127 |
| XM_026930461.2 | mRNA | downstream | 465 | 11958278 ~ 11973216 (-) | True | mccc1 |
| XM_026930533.2 | mRNA | downstream | 94958 | 11864946 ~ 11878723 (-) | True | fxr1 |
| XM_026930243.2 | mRNA | downstream | 227846 | 11742948 ~ 11745835 (-) | True | sox2 |
| XM_034308574.1 | mRNA | downstream | 441714 | 11527957 ~ 11531967 (-) | True | LOC117598402 |
| XM_034308575.1 | mRNA | downstream | 441715 | 11527957 ~ 11531966 (-) | False | LOC117598402 |
| XM_026930466.2 | mRNA | upstream | 39752 | 12020412 ~ 12032006 (-) | True | ncln |
| XM_034308561.1 | mRNA | upstream | 39752 | 12020412 ~ 12031899 (-) | False | ncln |
| XM_026930469.2 | mRNA | upstream | 82335 | 12062995 ~ 12065799 (-) | True | s1pr4 |
| XM_026930464.2 | mRNA | upstream | 330946 | 12311606 ~ 12324367 (-) | True | enc3 |
| XM_034308688.1 | mRNA | upstream | 353542 | 12334202 ~ 12353009 (-) | False | tmprss9 |
| TU212758 | other | downstream | 469719 | 11496074 ~ 11503962 (-) | False | LOC117598430 |
| TU212749 | other | downstream | 558241 | 11409092 ~ 11415440 (-) | False | G179803 |
| TU212647 | other | downstream | 727376 | 11243975 ~ 11246305 (-) | False | nppc |
| TU211855 | other | downstream | 2158456 | 9813892 ~ 9815225 (-) | True | G179035 |
| TU211757 | other | downstream | 2450351 | 9522416 ~ 9523330 (-) | True | G178942 |
| TU213621 | other | upstream | 736701 | 12717361 ~ 12720476 (-) | True | G180485 |
| trnam-cau_27 | other | upstream | 1255743 | 13236403 ~ 13236475 (-) | True | trnam-cau_27 |
| TU214009 | other | upstream | 1259089 | 13239749 ~ 13243162 (-) | False | rpp21 |
| TU214564 | other | upstream | 2380276 | 14360936 ~ 14361647 (-) | False | LOC113527598 |
| XR_004579086.1 | other | upstream | 2428066 | 14408726 ~ 14415069 (-) | False | rx1 |
