RNA id: XM_026930486.2


Basic Information

Item Value
RNA id XM_026930486.2
length 2943
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC113536512
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3555330 ~ 3561755 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCAGGTCGCTAAGGATGCCATGCGTCCACATGGACAGAGCCCCATCAGGAAGTCGCACTCCGTTTGCTTGAGGCTTTAATCCGCTTCAGGGAACTCCTGTTGGCTGCTCGACCCACGTGGTTCCTGCTCGTGTATAAAAAGTTTGTGTCTAAAGCGGTACAATGTTGCGATCGCAAGGGGTTAAAGCTGTTCACACGAGCGCATCACCGTGTCCATGAAAGCGATGAAGAGCTACTTGGACAGCGCAAACTGGAAGACGACACatcagacaaagaaagacaggacCTGAAACGAAAGGCGAATGTCAAGCACGTAGCTATTGTGCTgtgcggggaaaaaaaaaaaaaaagtagtagtggcatctttttattttctttcattatggATATTTTGAACTGATCAGAGACTGGGCAGCTTATCAGGCTACATGCATGGgctttaactgcagtgtttcacTCTGTAATACTGCTTCCATTATAATCTCTCCAGCCATGGCATGACGCTGAAGTGCCACCGATGCTGAGACTTTATCAAGTAGGACCGGGGAGACAATAAAGTCACCTTGTACTATGACAAAAACGTGATTTTCAGTTTTCAATCGCGCATCAGTGACCCACCAAGAACTGAAGATCTAAGAAAAAGATGCTTCTTTCATGATTTCATCCAATTTCAATGAAGTCTAGAAATCCTCGCATGGAAGATCTTAGTGCATCCTTACAGGAAGACTGGATGTTACAACTTGCTCTTGCGCTAAGAACATTCTCATCTGGGACGAGCCTGAACCACTTCTAAAACCTTACGAGCACAAGTTGGGCAAGTTCATCCTCCACGCGAAGACTCGCGACTCGTCtttctgtgctttctttttCGCTCTTAAAGAATGAGAAGTTCCCTTTTCAAGGTGCTTTGTCTCATAGCCTGGGCGCTCTCCGTGCGCTGCACGCCGGCGCCGGAAAGCCAGGCGCACACGACGGCGTCGCGCGAGTCGTGCGCGTCGTGCGGTCTCGCGCAGCCGGCCGACTCGGGGAGGATGGACGCGGAGTTCGTGGAGGCGGTCAAGAGGCACATCCTGACCAGGCTGCAGATGAGGGAGAGACCCAACATCACTCAGTCCATACCAAAGGCGGCCATGGTGACCGCGCTGCGAAAGCTGCACGCCGGGAAGGTGCGCGAGGACGGCAGGGTCGAGATCCCCGACGTGGACGGGCACGCGAGTCACGCCAATGACGTCGAGGAGGAAACGTCAGAAATCATCAGTTTTGCAgaaacagACGATTTGCTGTCTTCGAAGTCCAGcctcttcttcatcatctccaATGAAGGCAACCAGAACCTCTATGTGTCTCAGGCAAACCTGTGGCTGTACTTTAAACTCTTGCCTAGTTTGTTGGAGAAGGGCACTCGAAGGAAGGTCATGGTTAAAGTGTACTATCAGGAACCGGGCCTGGGCAGCAAGTGGAACCTGGTGGAGAAGCGTGTGGAGCTGAAACGCAGCGGCTGGCACACGTTTCCCCTCACTGATGCTGTGCAACTAGTGTTCTCCAAAGGTACACGAAGGCAGAACCTGGATGTTCGGTGCGAAGGCTGCGAGGAAGCAGGCGTTCTGCCTGTACTGGTGAACTCGGGTGATGAGTCGCACCGACCGTTCTTGGTGGTGCAGGCACGTGCAACAGACAGCAAGCACCGCATCCGCAAGCGCGGCCTGGAGTGTGATGGTACCAGCGGCCTGTGCTGCCGCCAgcagttctacattgacttccGCCTCATCGGCTGGAACGACTGGATCATCGCGCCATCGGGCTACTATGGCAACTACTGTGAGGGAAGCTGCCCGGCGTACATGGCTGGCGTTCCAGGGTCGGCGTCGTCATTTCACACCGCTGTAGTGAACCAGTACCGCATGAGGGGGATGAGTCCAGGCTCCATGAACTCCTGCTGTATCCCCACCAAACTCAGCACCATGTCCATGCTGTACTTTGATGATGAATATAACATCGTCAAGCGTGATGTACCCAACATGATCGTAGAGGAGTGTGGATGCGCTTGagcatggcttttttttttttaaagattcgTAACTCTGTAAACGTTCATTGATGGAACGAATTATTGTAAAGTGATATTTATGAACAGCTGGGTAAACAGTCACCTTGATgtccacacccacacacccatgCATGCACAAATCTTttgtacatatatttatgttGGTTAATATCTTTCTGGTAGACTCATTTATATGTGATACAGTCTTATTCTAAGAGCACAGGTTTGTACAGTAGGTGTTGATGTCAAAGAGATGAGAAAGTTGTGTCACAGGTTATTGCTGTTTCTTTGCTTCTCTCCTCTAAAATGGTCATGTTGGGAAATTGAGATGAGAGAAGCCTTAGGAAAGGGTCGTTTTCCCAGAATTTCTCAACTATGCCTCTTTCACTGTATACAAAAGCACTGACCAACTCCCCATTTACTCCTTTCAACAGCAGCACTTCGCTTAACCACTCCATTGGAAAACACGACAACCAATCCATTTAAGAGTCTCCATCAAGCAGTATTCATCTGTCCAACTCTGTCAAACAACTGACCCATATTGTCTAAGACATGCTGCTTTCTCAAGTATTCATGTTAGTGGGTCTTACTACAGCAGGACATGAGTAGGCATTTTGCCATTACCTAGTACAAGGGCTTTTTATATAGCAGGAGACATGAATCTTTTCTGTAATGCTTCAATCCTGTCTAGAGAGTTTGCtcatttgtgtaaaaaaatctgtacaCAGAGTGAAAGGAATTATGTCTGTCAATCTCTGCCTATGTGTTTGTTACCGTGctgtttgaagaagaaaaaaacacttccaaaAGTACTTAAAAGAACTGTAGTATATTACATTTCTTCTCTCAAGTTGCCATTTTTCAGTTGGTTAAGGGTGCAGCATcacacttgcaa

Function

GO: NA

KEGG:

id description
K22687 INHBB; inhibin beta B chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207646 lncRNA downstream 43098 3511991 ~ 3512232 (-) True G175483
TU207463 lncRNA downstream 344926 3210147 ~ 3210404 (-) True G175333
TU207460 lncRNA downstream 348359 3206751 ~ 3206971 (-) True G175330
TU207459 lncRNA downstream 349864 3205257 ~ 3205466 (-) True G175329
TU207332 lncRNA downstream 547668 3007004 ~ 3007662 (-) True G175213
XR_003403695.2 lncRNA upstream 10903 3572658 ~ 3577973 (-) True LOC113536694
TU207812 lncRNA upstream 230782 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA upstream 233924 3795679 ~ 3795925 (-) True G175611
TU207893 lncRNA upstream 360558 3922313 ~ 3922941 (-) True G175676
TU208008 lncRNA upstream 514389 4076144 ~ 4137879 (-) True G175767
XM_026930672.2 mRNA downstream 85516 3387164 ~ 3469814 (-) False gli2b
XM_026930671.2 mRNA downstream 85516 3387164 ~ 3469814 (-) True gli2b
XM_026930924.2 mRNA downstream 277496 3276863 ~ 3277834 (-) True LOC113536784
XM_026930925.1 mRNA downstream 285915 3268444 ~ 3269415 (-) True LOC113536785
XM_034308885.1 mRNA downstream 302434 3234070 ~ 3252896 (-) True pkd1l2b
XM_026930341.2 mRNA upstream 18220 3579975 ~ 3581987 (-) False serf2
XM_026930693.2 mRNA upstream 24622 3586377 ~ 3605995 (-) True frmd5
XM_034308417.1 mRNA upstream 44390 3606145 ~ 3610869 (-) True tmed3
XM_034308797.1 mRNA upstream 63668 3625423 ~ 3640960 (-) False znf710b
XM_026930685.2 mRNA upstream 63668 3625423 ~ 3640883 (-) False znf710b
XR_003403706.2 other downstream 254060 3301139 ~ 3301270 (-) True LOC113536796
XR_003403704.2 other downstream 415169 3140070 ~ 3140161 (-) True LOC113536794
XR_003403703.1 other downstream 416423 3138827 ~ 3138907 (-) True LOC113536793
TU207151 other downstream 798805 2754355 ~ 2756525 (-) True G175048
TU207201 other downstream 952119 2602414 ~ 2603211 (-) True G175098
TU207666 other upstream 7586 3569341 ~ 3572262 (-) True G175497
XR_003403696.2 other upstream 293436 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other upstream 293436 3855191 ~ 3909889 (-) False mical2a
TU207939 other upstream 430971 3992726 ~ 3996433 (-) True bola3
XR_003403702.2 other upstream 487110 4048865 ~ 4049043 (-) True LOC113536792

Expression Profile