RNA id: XM_026930497.2


Basic Information

Item Value
RNA id XM_026930497.2
length 2866
RNA type mRNA
GC content 0.44
exon number 1
gene id thap11
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 932231 ~ 935096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAAGTATTGTGGGACGTGTAGTTCCGCTTTTAGGCCGCTGCGTTTGATAACAGCGCACGAAGGagatcaacaaaacaaaatcaactGAAACTTGTGTGAGGCTGCTGTGGAGgaggaaataataaaattaataatttaggTAAATTAGTGAAAAAAGCGAGCGGCGCCGTTATGCCAGGCTTCACGTGCTGCGTGCCCGGATGTTATAATAACTCACACCGGGACCGCGAGCTCCGGTTCTACACGTTCCCGAAAGACCCGACGCAGAGGGAGATCTGGCTGAAGAACATCTCCAGGGCCGGAGTGAGCGGCTGCTTCAGCACCTTCCAGCCCACTACAGGGCACCGCGTGTGCAGCGTGCACTTCCCCGGGGGCAGGAAGACCTACACCATCCGAGTCCCGACGCTCTTCCCGTTACGCGGAGTGAACGAGAGGAGAAGTCGGCGCGGCAGGGGCAGGAAGGTGTACGCTGCGTCTGCGCCTGCGTCTGCGCCTGCGCCTGCGTCTGCGCCCATTCTCACCAGCGTCGGCGCAATCCACAGTGAGGCGCAGAGCGAGCCCGAGTTCGTGGTGCAGATCGGACAGAACGGGCAATACATCTCACCCGTCActgtatcatcatcatcatcagcatcatcatcatcatcatcagcatcagcatcatcatcagcatcatcgtTATCACTACCAGCTCCGGCGCTCAAGTCTGAGGACACGGCGGAGGTGGTGGTGACGGTGGTACCGGATCAGCCCGGTCCGCTCCTGGCGCTGTGCGGAGACGAGCACTCGTACTCCCTGACCAACGGCACGACCTCAGCCGAGCTCCTGAGGAAGCTCAACGAGCAGCGCGACATCATCGCCCTCATGGAGGTGAagatgaaggagatgaagaaCACCATCCGTCAGCTGCGCGTCAGCGAAGCGCGGCTGCAGGAGGAGCTCCGCGATCGCGACCGCGTGCTGTCCGGTATCGGGGCGGTTCGGAAGAAAGtctgacaaaacaaacaaaacaaaacaaaacaaaaccccgGACCCACAGAACAATGTCGTGTCGTGTTGTGTTGTTGGGGGgtgtttaaattttttgtttttgtttaaaattttttgttttgtttaaattttttgttttgtttgtttttgttttgttttgtttaaattttcaatttttaggagaaaaaaaattaggaaagaGTGATGGtgatgtgtcaaaaaaaaaaaaaaaaaagtttggtaaCTCACACATTTACGAGTTCTGTGAAACATCAGTGAAATTAccggaaaaaaaattcattgttCACGATGTTGTAATACCCAAGAAAGGAAACGTCCTCATCATGACTTATAAATATGCATGAGTATGCAAATATGGACACGCCCCCCTGCATTCATGACCCCGCCCCTAACAGAGCTGTATTAGAGAAACGGATAAATTCAGacatttttatacaatatttaataaggaaattaaattgaattgctCAGTCTGTTCTGTTGGAGTTATATCGATATCGGATCACCACATCACTCAGCCCTACACACTCAGACAAAAAAGGTACCAAAGGTACCAAAGGGTACCAGATGGTACCGTGCTTTGCCTCTGGGTCGGTACTGCCAAGTACACTTTATGTACCTTTAGTTTGTAGGTAAATTTAAGGTTTAAGTTAATTTACGGTCCGTTTATGTACTTTAAGGTCACtctatccacatttccaggtgaactATACAGACCGAAGGTACAAAAATGTCTCCTCTTCATAGTTCCACAaggaaacaacaaagaaaagtacagttaagtacctttttttttttttcccaaagagTGTGTTCTGAAGATGGCGACGGCGTTACTTCTCACGATGAACTTCCCAACTTCCCGtctttttagtttgtttgtttttgcgtTCAGTGATGCACCTGTGACCTTCTCCATTTGTGACACAATACTGATATCAGAGTTCTGGTACCGATCCGATACCGACATCGCGTCTGTGAAAAGTCAGAGACGTGAAGACAGCGGAGATCGTTTTAAACcgtttaaatgaatgaatagtggaaaaataaattgttCACAATGATTTTAAAGCCTAAGTAATGACTAAAATTGGCTCTGGAACGtctaaatcgaggtcatgagTTATAAATATGTATGATTATGCAAATCCTGGACACGCCCTCATGACCTCCTGGCATTCCTAACAGCCTGATATGGTTAAGATGAGATAACTAAGCTAGTCGGTTAGCTAATGAGTCAGACgagtgggatttcagtatcaGAGTGGAGTGGCGATGAACGTGGTGATTTtgtcactgatttatttttaacagcagACGAACCTGTGGGAAGATAACGCTGAGATTTCATCGTACGCAATCTGTAGCTAATAAATAAGATAGTCGTACATTTTGTACGTTTGTGACCGAAACACAGCGAGTGCAGAACAGACTGAAGCCTACAAtagacacttttttaaatctctgtatgaatttatgttttttttttttgtttgtttgtttttagttagTTTTCACGATTGCCAGCGTTTGTATAAATTCAGCGTaaccttcactctctctctcagactgtTCCATCATTACATGAGTTTCATTATTCTGTATTTAACATCCTGTTTGTTGTCATGTTTCGATGCGAGTGGATCGATCTGAGGATTCGATCCAAATCTGTGGATCTTCGCTGTTTGTTAAAATGAACTGAGGatttggagtaaaaaaaaaaaaaagagagatttcaAACAAATTCAAGTCTATTTTTTTGATGTAGTGATCCTGTAATATTTTCAGGCACTTGTGTTATTCctattaaaatgtttgtgtttttattttttattaaattcctGCAAAACCTTA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23211 THAP11; THAP domain-containing protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206150 lncRNA downstream 101962 829936 ~ 830269 (-) True G174150
TU206147 lncRNA downstream 108335 823639 ~ 823896 (-) True G174147
TU206125 lncRNA downstream 133399 796394 ~ 798832 (-) True G174127
TU206069 lncRNA downstream 362989 568413 ~ 569242 (-) True G174074
TU206042 lncRNA downstream 412258 506782 ~ 519973 (-) True G174054
TU206208 lncRNA upstream 13377 948473 ~ 1001717 (-) True G174202
TU206217 lncRNA upstream 50495 985591 ~ 988469 (-) True LOC113536472
XR_003403682.2 lncRNA upstream 51420 986516 ~ 988207 (-) False LOC113536472
XR_003403683.2 lncRNA upstream 51420 986516 ~ 988207 (-) False LOC113536472
TU206242 lncRNA upstream 66064 1001160 ~ 1001423 (-) False fbxl8
XM_034308880.1 mRNA downstream 19064 908291 ~ 913167 (-) True nrn1lb
XM_034308774.1 mRNA downstream 222000 689168 ~ 710231 (-) True adgrg1
XM_026930298.2 mRNA downstream 254140 665577 ~ 678091 (-) True si:dkey-181f22.4
XM_026930651.2 mRNA downstream 271847 647059 ~ 660384 (-) True slc7a6
XM_034308418.1 mRNA downstream 293231 605769 ~ 639000 (-) True scube2
XM_034308882.1 mRNA upstream 16289 951385 ~ 952329 (-) True LOC117598426
XM_026930712.2 mRNA upstream 63963 999059 ~ 1002638 (-) True fbxl8
XM_026930545.2 mRNA upstream 195935 1131031 ~ 1137703 (-) True aph1b
XM_026930759.2 mRNA upstream 203425 1138521 ~ 1147976 (-) True slc38a8b
XM_026930733.2 mRNA upstream 212960 1148056 ~ 1159962 (-) False tmppe
TU205424 other downstream 898099 30281 ~ 34132 (-) True calca
TU206214 other upstream 26400 961496 ~ 963078 (-) True G174207
TU206257 other upstream 122560 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 712233 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1667318 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 1819259 2754355 ~ 2756525 (-) True G175048

Expression Profile