RNA id: XM_026930545.2


Basic Information

Item Value
RNA id XM_026930545.2
length 2274
RNA type mRNA
GC content 0.43
exon number 6
gene id aph1b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1131031 ~ 1137703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cTTCCGCTTATTGTGCGGCTCTCGTCATTGGGCTTCGGTGCTAAAGCtgaaaattattttgattttgtttgtgtaaatccGGATGTAGGATTACATTTCGATACATTAACGTCTCCTGATTAACCTGTGTGCTTATAAACTCTGAATAACTGTATTTTTTCCCATATATAtcttaaatatttgtatatcCGGTCAGGGTGTATGGGCGGACCGGAAGTAGCCGCAGTAGTAGTTCCGGTAGAGGAGCTGTTTTCAGGTTAACGATGACGGCGGCGGTGTTTTTCGGTTGTACTTTTATCGCCTTCAGTCCCGCTGTGGCCTTGTTCCTGCTCACCATCGCCAGAGATCCTCTGAGGGTCATTTTCCTCATCGCGGGAGCATTTTTCTGGCTCGTTTCTTTGCTGCTGTCGTCATTGGTGTGGTTCATCGCCGTACAGATCAGTAATAAAGACAGCGGCTCGCAGCAGAAAGGCCTGCTGGTGTTCGGAGTGCTGCTGTCCGTCCTGCTGCAGGAGCTCTTCAGATTCGCCTACTACAAACTCTTAAAGAAAGCCAATGAAGGACTGCTGGCCATCAGCCAAGAGGAGACGATGCCCATCTCTGTTCGTCAGCTGGCTTATGtgtctgGTCTGGGATTCGGATTGATGAGCGGAGCGTTCTCAGTGGTTAACATCCTGTCCGACTCTGTGGGTCCGGGTACAGTGGGCATCCACGGAGATTCACAGCATTACTTCATTTCCTCAGcCTTCATGACTCTCGCTATAATCCTGTTGCACATGTTCTGGGGCGTCGTCTTCTTCGAGTCCTGTGAGCGCCGGAGGTGGTGGTCACTCGGAGCCGTGGTGTGCAGTCACCTGTTAGTGTCGTGCTTgACGTTTGCGAACCCGCAGTATGAAGGCAGTCTGATCCCCACCTACATGGTTGTGTGCGTGATGGCCGGCTGGGCGTTCTCCTGCGCCGGCGGTTCTCTGAGGAACCTCAGGCTTTGTCTCACCTGCAGGGACAAAGACTTCCTCCTGGTCAATCACAGGCCGAGATAACGGATTGTCTCTCTGTAAAGACTGGAGCTCACCGAGTTCACAGAGCTTCAAACCCTAGACTGTGGGACGGGGGATTTTCCTTTGTGCGtattcagcacttttttttgtatgtttctttttctgtcccTGTACCTCACCTCTTtctgtgtgagacagaaagagagagaattgtGAAACACCtcgttatttttttaatcaagcttTACAGTCAGTTCCTGCTGGTTTtgactgtgtgtttattctctgtTCTTCGTGCGTTTCTTAACAAATCTGAAATGTCGTAAGCCAGATTTACTGCTAAATCAGTTCCTCAGACGCATCTGGATTCGATCAGCCGGATTGAGTTGTTTTGAGAATCACACGAGAGTCGAAACCCTGATCAGCGACTCGGTAACACGGAAGCTACTGAAGCCTGGAGAGGACGTTACacgtgttttttgtttgtttttctttgcacacaaaacagaaagacGCGCGCAGTACAGAAATCATCAGTTtgctttttccatttctttagTTCCTaacattttgattcatttttgtaTATCATGATAATGTATATCAatcaaaaaaaaacccattaaaaTTATGTCAGATTCCTTATACAGTGATGTCGAAGGTGGCAGTGAGAATTTCTctcatataatatatacatatataataatataatacatatataaataactcTTTCATTAAAATTATGTCTATAAAGATTAACTCCATAACAGagaaataaaccaaaataaGGAAAGCTTTAATTAAATCGCCGTAACAATTACAGAACCACAATTTAgccatgtatttatttacaactTGTATCTAAATGTGCGTTAATCTTGTTTACACGCTCGTCGTCTTGGTAACAAACCCAACAACCACGTTGAAGAACGAACAAATTCAGGCTCCACGTGCGAAGAACAGAGCTCGTGTCTCTCTAAAAGCGttcactttatattttattgacatTAATTACGTCTGAAAACATCTTTTCTgcttaaatattaatttcaatGTCTTGATCACTGTTACTGTTTGTCtctatgtttatgtttaagaaGGAATGAATGTTAAGAGTTTTGTTGTATATTTGCAGTGAACTTTCCTATCAGAAGTGTGACTgatgaattattaaattatgcTCTTATAGGTGATGTTTCTTCCCTTTCGTAAGATTCTCTGACTACTGTAACCTCAGCTGCTGGCAAAAAGTTTATAAAATGGCGCTGAACGCTGA

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0016485 protein processing biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06172 APH1; gamma-secretase subunit APH-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206256 lncRNA downstream 74124 1056698 ~ 1056907 (-) True G174246
TU206255 lncRNA downstream 74406 1056188 ~ 1056625 (-) True G174245
TU206254 lncRNA downstream 76589 1053164 ~ 1054442 (-) True G174244
TU206253 lncRNA downstream 81225 1049305 ~ 1049806 (-) True G174243
TU206186 lncRNA downstream 83308 1046060 ~ 1047723 (-) True G174183
TU206348 lncRNA upstream 197057 1334760 ~ 1337021 (-) True G174319
TU206351 lncRNA upstream 243614 1381317 ~ 1384518 (-) True G174322
TU206354 lncRNA upstream 272294 1409997 ~ 1414190 (-) True G174325
TU206358 lncRNA upstream 281666 1419369 ~ 1419745 (-) True G174329
TU206375 lncRNA upstream 327791 1465494 ~ 1469982 (-) True G174345
XM_026930712.2 mRNA downstream 128393 999059 ~ 1002638 (-) True fbxl8
XM_034308882.1 mRNA downstream 178702 951385 ~ 952329 (-) True LOC117598426
XM_026930497.2 mRNA downstream 195935 932231 ~ 935096 (-) True thap11
XM_034308880.1 mRNA downstream 217864 908291 ~ 913167 (-) True nrn1lb
XM_034308774.1 mRNA downstream 420800 689168 ~ 710231 (-) True adgrg1
XM_026930759.2 mRNA upstream 818 1138521 ~ 1147976 (-) True slc38a8b
XM_026930733.2 mRNA upstream 10353 1148056 ~ 1159962 (-) False tmppe
XM_034308821.1 mRNA upstream 10366 1148069 ~ 1159962 (-) False tmppe
XM_026930732.2 mRNA upstream 15378 1153081 ~ 1159962 (-) True tmppe
XM_034308751.1 mRNA upstream 186948 1324651 ~ 1497726 (-) False sox6
TU206257 other downstream 71797 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 167953 961496 ~ 963078 (-) True G174207
TU205424 other downstream 1096899 30281 ~ 34132 (-) True calca
XR_003403705.1 other upstream 509626 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1464711 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 1616652 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 2001124 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 2002367 3140070 ~ 3140161 (-) True LOC113536794

Expression Profile