RNA id: XM_026930626.2


Basic Information

Item Value
RNA id XM_026930626.2
length 1972
RNA type mRNA
GC content 0.40
exon number 6
gene id zgc:153993
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4587003 ~ 4597773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGCTCGCGCTATTTTTAACCAGGCCTATTTCCGCGCCACTTCCTTGTTTTGTCGTCTCTCGCTTGGAGTTAATTCTTATGGCTGAGGAATTCATGGCGCTTTCCGTGAAGTTTTGGCTTAACCTCCGTTTTTTCTAATGGTGCGGAAAGAATACAAACAAGGACgcaaacatttaaacttttacAGTTTAGTTTCTTCTCAGCTGTCAACACAAAGTCAGAAGAAGCCACCCGAACTAGTCATTTCGTCTGAGCGGTTATAGTTAGTTAgcgagttagctagctaactagcataaGAGGTGCCTTTTGTAAGTCTTTGTAAGTTTTGCCATTGAACAACACAATGGCAGATTCACATGGCGACGACAGGACGGACGACAGTGAACTAAAAGGTGCAACAGGTGGTGAAGATGTCATTGATGATAGGATTATAGAAGAAGGTGCTATAGTACTGAGAGGATATGTAATAGATCGGATCACTACAGAGGACCCGGCCATGCACGTGAGTGCCGTGGACCTCGGTGGAACAGCTAACGAAGGGGATGATCCTCATGTCAAAGAAGTTGTAGAGCAGCTTCTTAAGATCGCCGATGATCTGAACCGGAATGCAGAGCTTCAACACCTCATCAACACTGTACAGGCGAACTGCGCTCAGGAGGTGTTCATGACTGTGGCCAAGAGCATCTTTGCAGATGGCATTAACTGGGGGCGAGTAGTGGCTCTCTTTCATCTGGCCTATCAGCTAATTTACAAGGCACTGACTCAAAACCACTTTGAAATCATCAAGAACATCATTAGCTGGGTATTGCAGTTTATCAGGGAACACATTTCCGCCTGGATCAGACAGCAAGGAGGATGGGAGGGCGTTATCCGCAGTGTGTCACGATGGCGCACCGTGTCCATCATTGCAGCAGTGGCGTTCATCACGGCTGTTGTTTACTGGAGAAGAACTCGCTGACCTCCCCACTCTGAAAACCCAACATCATTAAAAGAGACAGATTCACTAATTTGCACAACCATTGCATTGACCAAATGATCATGTTGATTGGCACGTATTAGATCTGTTAGCAAACTATAAAACAGTGTGGAATAAGAGCTCCAATTCAGTACACAATATAGCCCTTTTGAGATTGTTCCCTATGTTGTGTGCTTATACTGTAATGCAACAAGGCACACCTATTTATTAACAacactgtgtcttttttttggaCACTCCACTACATTTGTAGCAGTCCATTTGTCCTCCACAGCTCTTAGCATTTTAATAAGTGCCATTATCTTCCAGCCCTACCTCCAACTGGTGAAATATCTGAAAGCAGTTTATCAAAtgattttaaatagtttattttttatagtggACCACATACTACTTGtattcaaaaaaaacaaaacaaaacaaaacaaaaaaaaccatggtGTCAGATTTTAAACTATTTAGAATGTTGTGTTTCTGACTCTTGTCCTGTCTAGTCAAGCTTACTTTGCAGGaatgttatgaatgtgtttacACTTAATATTAGGCAGGGCAGCAGATAGTGAAGGAAAATGTGGTAGAGGTTCTGCTTATGTGATAAACAACAGGAAAGACCAGAAGCAATAAATTAATCACTGCTTTATTGCTTacattaaattgaaaaaaaattttaaaaaaatcatttcaattgGATTATTGGGACTGGAGTTTTAAAACATGACTGTAGCTATCAGCTGCAGCTACTGTATGTATATCTAGCCTTTATGTGACATGCATTGTTGACAGCTGAGGAGATCAGTGGGAAAAAATTATAAGAGAAACATTTGAATAagtaaaaacataaatgaatgtgTATATTAAGGTATAGATCAAAAATTAAAAACGTACAGGGGATATTTCTGTGTACgtaagtgtttatttctgtcaTGAATTCAGGGGAATTGTACTTGGTCTTTGTTTAcatcaaaataaatatgatCAAGTGATCAAAATGTGAT

Function

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0001836 release of cytochrome c from mitochondria biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0008053 mitochondrial fusion biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0015267 channel activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208186 lncRNA downstream 82682 4499478 ~ 4504321 (-) False lto1
TU208115 lncRNA downstream 287135 4298977 ~ 4299868 (-) True G175854
TU208008 lncRNA downstream 449124 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA downstream 500810 4083972 ~ 4086193 (-) True G175775
TU207893 lncRNA downstream 664062 3922313 ~ 3922941 (-) True G175676
TU208239 lncRNA upstream 24355 4622128 ~ 4622987 (-) True G175963
TU208248 lncRNA upstream 32575 4630348 ~ 4632785 (-) True G175967
TU208311 lncRNA upstream 134609 4732382 ~ 4736416 (-) True G176015
TU208331 lncRNA upstream 242215 4839988 ~ 4840693 (-) True G176028
TU208332 lncRNA upstream 242975 4840748 ~ 4847141 (-) True G176029
XM_026930757.2 mRNA downstream 45891 4536922 ~ 4541112 (-) True fgf3
XM_026930737.2 mRNA downstream 57276 4524986 ~ 4529727 (-) True fgf4
XM_026930795.2 mRNA downstream 74804 4509420 ~ 4512199 (-) True fgf19
XM_026930851.2 mRNA downstream 82674 4498946 ~ 4504329 (-) True lto1
XM_026930361.2 mRNA downstream 307418 4269174 ~ 4279585 (-) True dhcr7
XM_026930525.2 mRNA upstream 58833 4656606 ~ 4688578 (-) False pacsin3
XM_026930523.2 mRNA upstream 58833 4656606 ~ 4688576 (-) False pacsin3
XM_026930522.2 mRNA upstream 58833 4656606 ~ 4688576 (-) True pacsin3
XM_026930524.2 mRNA upstream 58833 4656606 ~ 4670231 (-) False pacsin3
XM_034308979.1 mRNA upstream 140310 4738083 ~ 4861628 (-) True neo1a
XR_003403708.1 other downstream 486577 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 487152 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 490233 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 491741 4095207 ~ 4095262 (-) True LOC113536799
XR_003403701.2 other downstream 534236 4052589 ~ 4052767 (-) True LOC113536791
TU208693 other upstream 482044 5079817 ~ 5080895 (-) True G176307
TU208689 other upstream 541837 5139610 ~ 5190522 (-) False trip4
TU208736 other upstream 594191 5191964 ~ 5196818 (-) False trip4
trnai-uau_1 other upstream 692729 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 716389 5314162 ~ 5314254 (-) True trnai-uau_2

Expression Profile