RNA id: XM_026930672.2


Basic Information

Item Value
RNA id XM_026930672.2
length 5251
RNA type mRNA
GC content 0.53
exon number 14
gene id gli2b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3387164 ~ 3469814 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acagaggggaaGAGAAGGAGATCAGACTGAACACAGATCAGCCCGGAGAGAtcaactcacactcacacactcactcactctctctctctccctctctctctctctctctttcacacacacacacacacacacacacaccgtcccAAATCTCCGTGCGCTTCAGCTCCTTTCTGTTTGTGCGCGAGCGATGGTTGGGTTGCGGAAAGGCTTCGTCGCGCGAAAACAGAAGTTCCTGCGCTGATCCGAAGTGACGCGAAGACGCGCGAGCTCTCGTGTGAAGCGCGCTGAATGATCGCGGAGAGTTTGGGCAAAGTTTTGGCGAAGTTTGCGCTGCGCTCGGATGGCGGTTCGGGTCCCGCCGCGAGGGACAAGCTTCTACCTTCTGCAGCGAGAAAGTCTGGCGTGAAGAAGAAGAGCCAAGCCTCAGCTTTTGGACACGTGAACCAGgaaaaacattaacactaaaAAGAATCAGCCACAATGGAGACCAGTGCCTCCACAACTGCTGAGAAAAAAGAGTGCAAAACAGCTGGACTGGATGCCAACGGCTTCAGCGAACTGCCCAAGAAGCCCTCACCTACCTTCCTAAGCAGAGGGCCTCATCATATATTCCCGACTTTCCACACTCCGATCCCCATTGACATACGTCACCACGAGGGAAGATACCACTATGAACCTCATGGCCTCCACCCCTTGCATGGAGCTCCAGCGTTAGGGAGTCCGGTTATCTCTGATATATCCCTGATCCGGCTCTCACCAGGCGGCCCGGCCGAGTCGCCCTTCAGTCCCCCTCATCCCTACGTCTCACCCCATGTGGAGCACTACCTGCGCTCGGTCCACGGCAGCCCAACACTTTCCATGATCTCAGCGGCCCGTGGGCTCAGCCCTGCAGATGTCGCCCATGAGCACCTGAAGGAGCGTGGGCTATTCGGTCTTCCTCCTCCCCCTCCCGGAGCCAACTCAGCTGATTACTACCACCTGATGGCTAGTCACAGGAGTCCATATGGAGATCTGATTGCAGCTGGAtccactactgctgctgctgctgccgctgctgctgctgttcaccTCCCAGACTACATCAACCCGATGGACAtgtcGCGCTTCCCCAGTCCACGCCTCACCCCCAGGCTGAGCCGGAAGAGAgctctgtccatctctccacTTTCAGACGCCAGTATTGACCTACAGACTATGATCCGCACTTCTCCTAACTCTCTAGTGGCCTACATCAACAACTCGCGCTCCAGCTCGGCCGCAAGCAGCTCGTACGGCCACCTCTCCGTCGGCGGCATCAGcccttcctttcctttccatcactccatcaacCCGGTAGCATATCAACAGCTGCTGTCCCAGCAGAGAGGCCTGAGCCCTTTTGGACACACACCTCCCCTCATCCAGCCCTCTCACACCTTCTCCTCCCGACAACACACACTCGCCGGCTCGGGACTGAGTGCTAGCACACATAATGAAGCTGAGACTAAGAACACAAGTGGTGACTCGGCAGTCAGCAGCACAGTAAACCCATTGCACACCAAAAGGTCAAAGGTTAAGACGGAGTTGGACAGCTCACGGCCTCTCTCACCCTGCTCACCGGACCCTTCACCACCAGTGGACCCGAAAGAGGACGTGGACAGAGACGAGGGCAAGCAGGAGCCGGAGGTGGCGTACGAGACAAACTGCCACTGGGAAGGCTGCAGCAAGGAGTACGACAGCCAAGAGCAGCTGGTCCATcaCATCAATAACGAGCACATCCATGGGGAGAAGAAGGAGTTTGTGTGTCGTTGGGAGGAGTGCTCCAGAGAGCAGAAGCCCTTCAAGGCCCAGTACATGCTGGTGGTGCACATGCGCAGACACACAGGGGAGAAGCCACACAAGTGCACTtttgAAGGTTGCTCTAAGGCATATTCACGTTTGGAGAACCTGAAAACACACCTTCGCTCACACACTGGGGAGAAACCATACGTGTGTGAACATGAAGGCTGCAACAAGGCTTTTTCCAATGCCTCAGACCGGGCCAAGCATCAGAACCGCACACATTCCAATGAGAAACCGTATGTTTGTAAGATTCCGGGGTGTACCAAGCGCTACACAGACCCGAGCTCTCTCCGCAAACATGTCAAAACCGTGCACGGCCCAGAGGCACATGTCACCAAGAAACAGCGTGGAGACCTGGTGCCCCGACCTCAGCCCCCACCACGAGAGAACGGAGAGAACGAAGGAGGAACCAAACAATCTGGCCGTGAAGGACAAGACAAGTTTGAGGCCAACAGCACCACTAGAGGCGTGGAAGACTACCTCCAGGTCAAGTCAATAAAAACAGAGAACTCTGTGATGTATCAGTCCAGCCCTGGTGGTCAGTCATCATGTAGCAGCCAGCCGTCACCACTTGGCAGTGCCACCCACCATGACGGTGGAATAGAGTTGTCGGGCCCCGGCGGGGGCAGCATGGGAGACCTGAGCATGCTGGATGACGTGCCCCTGGTGGATTCAACCGTCTCCACGGGCACACTGGGCCTCCACCTGCGCAGGAGTGCCAGCCCGGCTCGCAGGCTGAACCACCTGAAGCAAGAGAAGCTGAAGACAGTGAGGGAGTCGTGCTCCTGGGCAAATGCTGTTCCACAAGTTCCGGACACAAAGCTACCACCAATCCCTAGCAATGGTTCCTTACTGGAGAGCTCTGGACGTGTCGGCAATATCCCTGTACCCATCACCGGCCTTCGTCTGAGTGACATTTGCCCTGGTGAGACAACAGTTCTGTGCCAGCCAGTGGAGCGTCGAGACAGCCTGGCGAGCACAGTGAGTTCAGCTTATACGCTGAGCCGCCGCTCCTCTGGCATCTCTCCCTGCTACTCCAGCCGCCGCTCCAGCCAGGCCTCACAGGCCGGCATCCGCATCAACAATGTCAGCTCGGCCGACTCTTATGACCCCATCTCTACAGACCTGTCACGCCGCTCTAGCGAGGCCAGTCAGTGTGGAGGCCTGCCAGGCCTGCTCAGCCTCACCCCGGCCCAGCACTACCGACTCAAAGCCAAATATGCCGCAGCAACAGGTGGCGCTCCACCTACCCCTTTGCCCAACATGGATCGCATGAGCCTGAGGACACGAATAGCCCTGCTGGGAGATCCACATGAAACAACTATGCACCCACTTGGCCTCCCCACAGTGCCCAGGAGATGCAGTGACACAGGGTATCCCACTACTAGCATGATGCCCCATGAGGTACCAGGCAGTATAACAAGGCGCGCTAGTGATCCAGTTAGACGGGTGGCCGTTGATCAGCAACGTCTCCAGCAGGGGCAGCGTTTCAACAGCATGAGCAATGTGAACCCTAATCCACCACACTTTCCCTCTTCCAGCCGCCACTTGTCAGTGCAGAGCTATGTTCGCTCTGATGGTAGTCTACACCGCCTCCAGTACCCTCCCCGGCCTCCCAGCATCTCTGAGAATACTGCAATGGAGACGAGCGACATGGATGGTCCAATCAATGGCACTGCTGATGACTTGATGTTGCCTGATGATATGGTTCAGTACCTCACTTCTAATGGAAATTCTACACAACACAATGGGTCTGGGTACCGGCACCAGCAAGCACAAGGCTTCCTAGGGAATAGTGCCCCTCCACCTCAACCATGTTACTACCAGAGGCGCATGGCTGTAGCGGATGGCACTGCAGACATCATGACGCAGCAGACATCAGCTTCTTGCCAGACTAGTCCAGCACAACAGCACATGTCTCCCAGTGCCAACAAGAGCCACATGCCTGTGCAGTGGAATGAGGTCAGCTCAGGGACAGTGGAGGCATCTCCCAGCCAAATCAAGCAACAGCAAGCTTTGGATTGGGGAAATATAACTGGTCTCCAGCAAAAACAGAACTTTGGCCCTATCCAGATCCTCAAATCCAACCAGCAAGTAAGATCCATGAGTCAGAACCTTGCACATGCTGCTCAACAGAGTTCTATGCAGAGGAACGAGGTTATGGCCCAAAGGATGACCTGTAGCCAAACTGTTAGGCAGCAAGGCAACAAGAACCACCAGAACGAGCATATTCACAATCAGCATGGATACCACCAAGGAAATGACATAAACAGAAGCACCAGTCAGCATGCCTCTTGTGGTAATATTACAGGAGGCAATGTAGGTTTGACAAGCCCATCTAAGAAAACAATGCAGCCCATGAACATGCAGAATAACAGGGTAAGAACTAAGCCAGTGGTCAGTCAAAGCCATGTAAACTTTGAGAATAATCAAGGAGATTATTCCCATATGAGCAGTGATCAGCATAGCTATGATACTCTTTCCCAGAATCCTATCCTGAATGGAAACCGTGGTCTACTGCAGCCAAGGCCGCCCACAGAAACTAAACCCTTGGCCAGGCAGCACTCAGGGCCAAATGCAATGACAGCACAGCAACCTGGTTACCCACAATCCCACTTCAGCTCAGCATACAACACCTCTGAAGCTAGCCCCAAAAAGCCTGCCAATGTGGGTGTTAGTGACACAGACAGCAATGCCATGTTCTACACAGGACAGATCCACATGTTTGAGTCCAGCAGTCTGAATATGCATGACACCACTGAAGCAGTGGACTGTGGCACAGATAACATAACAATAGCTGCTGTCAGCTCCCCAGGAACCAATCAAGTCTCAAGCACGGTGGACTCCGCCAGTGGAGTGGAGCAGACCCAGATTGACTTTGATGCCATACTGGATGATGGTGACCACTCCAGTCTCATGTCAGGAACTCTAAGTCCCAGTATCCTCCGCAGCTTGTCTCAGAATTCCTCCCGCCTCACTACGCCCCGGAACTCTGTGACATTGCCTCCAGTACCCGCAGGAATTGGCAACATGGCCATCGGAGATATGACCTCCATGTTGACCGCGCTGGCAGAAGAGAGTAAGTTTCTTAACATGATGTCTTAAGAGGTCCAACAGGAAGTAGAATTGGTGACTGATGACCTGTTGGCATTTCTGAATAAAGAATTAAGACTGTCCtagaattttgtgtttttatacatGTCTGTATTATCTGTATTATCCTGTATAGCATTAGAACAAATACTTAGTAGTTTCCCCTTTGCTAAAAAAAGCCATATTTTGCCTTAGACcaatatatgtactgtatataaatacagaaaatttgATAAACTTCAGTCGAGTATTTTTGTATTCTCTTTTATGGTGGTGAAATGAGAGTAGCAACAAGTGCCTAGCTATGCAAATGCATatgcaggagaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0021534 cell proliferation in hindbrain biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0021508 floor plate formation biological_process
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207463 lncRNA downstream 176760 3210147 ~ 3210404 (-) True G175333
TU207460 lncRNA downstream 180193 3206751 ~ 3206971 (-) True G175330
TU207459 lncRNA downstream 181698 3205257 ~ 3205466 (-) True G175329
TU207332 lncRNA downstream 379502 3007004 ~ 3007662 (-) True G175213
TU207149 lncRNA downstream 620559 2760210 ~ 2766605 (-) True G175046
TU207646 lncRNA upstream 42177 3511991 ~ 3512232 (-) True G175483
TU207665 lncRNA upstream 80051 3549865 ~ 3581971 (-) True serf2
XR_003403695.2 lncRNA upstream 102844 3572658 ~ 3577973 (-) True LOC113536694
TU207812 lncRNA upstream 322723 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA upstream 325865 3795679 ~ 3795925 (-) True G175611
XM_026930924.2 mRNA downstream 109330 3276863 ~ 3277834 (-) True LOC113536784
XM_026930925.1 mRNA downstream 117749 3268444 ~ 3269415 (-) True LOC113536785
XM_034308885.1 mRNA downstream 134268 3234070 ~ 3252896 (-) True pkd1l2b
XM_034308870.1 mRNA downstream 197869 3169323 ~ 3189295 (-) False nfat5b
XM_026930486.2 mRNA upstream 85516 3555330 ~ 3561755 (-) True LOC113536512
XM_026930341.2 mRNA upstream 110161 3579975 ~ 3581987 (-) False serf2
XM_026930693.2 mRNA upstream 116563 3586377 ~ 3605995 (-) True frmd5
XM_034308417.1 mRNA upstream 136331 3606145 ~ 3610869 (-) True tmed3
XM_034308797.1 mRNA upstream 155609 3625423 ~ 3640960 (-) False znf710b
XR_003403706.2 other downstream 85894 3301139 ~ 3301270 (-) True LOC113536796
XR_003403704.2 other downstream 247003 3140070 ~ 3140161 (-) True LOC113536794
XR_003403703.1 other downstream 248257 3138827 ~ 3138907 (-) True LOC113536793
TU207151 other downstream 630639 2754355 ~ 2756525 (-) True G175048
TU207201 other downstream 783953 2602414 ~ 2603211 (-) True G175098
TU207666 other upstream 99527 3569341 ~ 3572262 (-) True G175497
XR_003403696.2 other upstream 385377 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other upstream 385377 3855191 ~ 3909889 (-) False mical2a
TU207939 other upstream 522912 3992726 ~ 3996433 (-) True bola3
XR_003403702.2 other upstream 579051 4048865 ~ 4049043 (-) True LOC113536792

Expression Profile