RNA id: XM_026930684.2


Basic Information

Item Value
RNA id XM_026930684.2
length 2473
RNA type mRNA
GC content 0.51
exon number 5
gene id znf710b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3625423 ~ 3640960 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaggggagagagaggaataagAACAAGCTCACatacagagagaacagagacagtgtgtatctgtgtgtgtgtttgtgtgtagctaTAGACAGCAGTAGAGTGTGGAGCAAAAGGGGCAAGCAGGTAAACGTGAACTTTTGACTAAAGATGAGATCGCTCAAACATCTAAAACCTCAAACCAAGAGAAATTTGGAGGAGAAGACCCAGCAGCTGGTTCGATGTTACGCTGAAGCCATGCACCAGCAGATGGATGTGGGGACACAGACAGACCCAGTGGTGGTCTTGTCTCTGGCCCAGGCTGCTGTGTTGGGACTTATATCCCAGAACGAGGTCTTCGGTGCCACCATTGCACCCAACGGCTTTTATACCGGCGAGCCCAAAGAATCTCCTGCTCCGTCCATCGAGCGGATGGACTACGAGTATGCTGACCAGCTCATTGGTGCCAATGGAGACTACCTGGGTGTGAACCTCGGAGAAGAAGGTCAGGTTCACCCAAGCTGCGCTGAAAGGAGGTGGCAGGGGACACCTGAAAACACAAAGCCTCTTGTAGGGCACCAGAACTCGGGTTCACATGTCAAAGGTGAGTCCGTGACCCCGGGACTACCTTCCTGCAACCACATGATGAGCATGATGCCTAGAGAGAGCATGCAGATGGTGGACAGCTCTGGTTACCGCCTTGCATCCAAACCTCACCCCAACAACTGCTGCTCTACCTGTGTCCGGGAACCCAAGAGCACACATCCACCACCTAACCACCATGTTCATAACCACCCCAACACTCACACATCTAATGAGGTTCATTCTCATGGCAGAAACCATACACtggagaaaagaggaaatgagGACGTACAAGAGGAAGGGAATGATGCAAGGATGGGTAAGGCCGGCGGTGGAGGGGAAGAGATCAGCAGCTACTTCCGTGCTAATGAGGTTGGCTATGAGGGTGGCGATATGGATGGGGTCGGGGAGTTTGATGAGAGCAACCAAGGCCTCTTCTGGGGGGAGCCTGTGGAAGGGGAGGCACCGCGGGGGCGCCGCATTGACCGATTGGACATCAACATTCAGATCAACGAGTCATATTGTGTGGACGTTGGCGAAGGCTTGAAGCGCTGGAAGTGCCGCATGTGTGAAAAGTCATACACTTCTAAATATAACCTTGTAACACATATCTTGGGTCACAATGGCATTAAACCCCATGCCTGCCCACATTGTGGTAAGCTCTTCAAGCAGCCAAGCCACCTGCAGACACACCTCCTGACGCACCAAGGCACACGGCCGCACAAGTGCACTGTCTGCAAAAAGGGTTTTACTCAGACCAGCCACCTAAAACGCCACATGTTGCAACACTCAGATGTCAAGCCCTTCAGCTGTCGCTTCTGTCGCCGAGGCTTCGCCTACCCCAGTGAGCTGCGAGCCCATGAGGTAAAGCATGAGCGAGGCCGCTGCCACATCTGCACGCAGTGCTCCATGGAGTTCCCCACCTATGCCCACCTCAAACGCCATCAGGTCAGCCACCAAGGGCCAGCCACCTTCCAGTGTAGCCACTGCAGTAAGACATTTGCTTACCGTAGTCAGTTGCAGAACCATATGCTGAAGCATCAGGCCCAACGCTCTTTTTCCTGCAGCCAGTGCGGCCTGCAGTTCCTGCAGCTCCACCAGCTACGTCagcactctctcacacacaaagtGCTCAAGCCTCAGGCACGTGCCTCTAAGGGAACAAAAGGCTTCAAGTGTGACGTATGTGCTCGCGAGTTCACATTGTCTGCAAACCTGAGGAGGCACATGCTGATCCACGCCAGCGTCAGGCCCTTTCAGTGTCACGTCTGCTTCAAGTCCTTCGTCCAGAAGCAGACTCTAAAAACTCACATGATCGTCCACCTTCCTGTGAAACCCTTTAAGTGCAAGgtgtGTGGGAAATCATTTAACCGAATGTATAATCTTCTGGGTCACATGCATCTCCATGCTGGCAGCAAGCCATTTAAATGTGCATACTGCTCCAGCCGATTCAACCTGAAGGGAAACCTCAGTCGACACATGAAGGTCAAACATGGCATGGATGTATCCCCAGAGGGACAAGATGCTCCTCCAGATCTGGAACCTCATGAGGATTATGAAGAGGATAACTTTAACTTCGCTGCCCCTGAAAATATGGATGCTAACGATGCGCCTAATCTCACCAAGCTCTCTGAGGTTGCTATACAGGAGCTGGACTATTATAACTTTGGAAAGGATGTGGGCAACTACAACACAGCATGAGCCCTATGAATAAGACTAAAGCTGAAATACCGTTGAGTATCCATTGAACTAATTCGGCACTTATCAGCCATATGCCGGTCATTACGTATGTCCATGAGAACCAAGACTTCTCTATTATTACTGATGGACAGATGGCCATCTTGGTTTCACTCATGTTGTAACTATTCTGATCCTGTTTCCTAAGAACCACTAAATTTGCTAAGAGTCTTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207665 lncRNA downstream 43452 3549865 ~ 3581971 (-) True serf2
XR_003403695.2 lncRNA downstream 47450 3572658 ~ 3577973 (-) True LOC113536694
TU207646 lncRNA downstream 113191 3511991 ~ 3512232 (-) True G175483
TU207463 lncRNA downstream 415019 3210147 ~ 3210404 (-) True G175333
TU207460 lncRNA downstream 418452 3206751 ~ 3206971 (-) True G175330
TU207812 lncRNA upstream 159633 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA upstream 162775 3795679 ~ 3795925 (-) True G175611
TU207893 lncRNA upstream 289409 3922313 ~ 3922941 (-) True G175676
TU208008 lncRNA upstream 443240 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA upstream 451068 4083972 ~ 4086193 (-) True G175775
XM_034308417.1 mRNA downstream 14554 3606145 ~ 3610869 (-) True tmed3
XM_026930693.2 mRNA downstream 19428 3586377 ~ 3605995 (-) True frmd5
XM_026930341.2 mRNA downstream 43436 3579975 ~ 3581987 (-) False serf2
XM_026930486.2 mRNA downstream 63668 3555330 ~ 3561755 (-) True LOC113536512
XM_026930671.2 mRNA downstream 155609 3387164 ~ 3469814 (-) True gli2b
XM_026930850.2 mRNA upstream 26480 3659384 ~ 3679257 (-) False arntl1b
XM_026930848.2 mRNA upstream 26480 3659384 ~ 3679257 (-) True arntl1b
XM_034308989.1 mRNA upstream 27421 3660325 ~ 3678501 (-) False arntl1b
XM_026930382.2 mRNA upstream 102842 3735746 ~ 3737554 (-) True rassf10b
XM_034308947.1 mRNA upstream 108737 3741641 ~ 3812372 (-) True tead1b
TU207666 other downstream 53161 3569341 ~ 3572262 (-) True G175497
XR_003403706.2 other downstream 324153 3301139 ~ 3301270 (-) True LOC113536796
XR_003403704.2 other downstream 485262 3140070 ~ 3140161 (-) True LOC113536794
XR_003403703.1 other downstream 486516 3138827 ~ 3138907 (-) True LOC113536793
TU207151 other downstream 868898 2754355 ~ 2756525 (-) True G175048
XR_003403696.2 other upstream 222287 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other upstream 222287 3855191 ~ 3909889 (-) False mical2a
TU207939 other upstream 359822 3992726 ~ 3996433 (-) True bola3
XR_003403702.2 other upstream 415961 4048865 ~ 4049043 (-) True LOC113536792
XR_003403701.2 other upstream 419685 4052589 ~ 4052767 (-) True LOC113536791

Expression Profile