RNA id: XM_026930689.2


Basic Information

Item Value
RNA id XM_026930689.2
length 1562
RNA type mRNA
GC content 0.50
exon number 4
gene id lmo1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 299224 ~ 335808 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAGCGCGTGGAGCACCGAGCGCATAAATTGTGCGCGCGAAAGGGGCAGAGAACGGCAGCGCGAGCGATGCGTTTCAGCCGCTCTGTCATCTCCTACATACACTCcggatttcatttttttctccacctcctttttctttctttccttccagcACCACCGGAGCCGGTTCGGTTCGGTTCGGTTCGGTTGTacgttttgttgtttgtttgtttgtttgtttgtttttcccctttttgaAGTTTTAGGTCTTGCTCGGATCGGAATGTAGCCGTCACGCGCACGTCtcggggtttttttttgtttactcgACTTGTGCGGATGTGTGCACGACCGGAGACCCTCACAGACCCTCACAGAACCTCCGAGAACCTCCGAGAACCTCACAGAACCTTACAGAACCTTACAGAACCTTACAGAACGTGACTGAAACGGAACAGCacgacgcacacacacgcgcgcgcggaGCCTGCAGCAGCACGCGGACCCTTTTTTCTattatcattttcattattttattttaaaccgagagagagagagagagagagagagagagaggagaagaataGGAAGaataggaagaagaagaagagaaccCTGCTGGATCCGAGAGCGGAGCGTCCTGAGCCGGACTCCTCCTCATTCCTCAGGACCATGGTGTTGGACAAGGAAGAGGGAGTGCCGATGCTCTCCGTCCAGCCCAAAGGCAAGCAGAAGGGCTGCGCTGGCTGCAACCGCAAGATTAAAGACCGCTACCTGCTCAAGGCGCTGGACAAATACTGGCACGAAGACTGCCTGAAGTGCGCGTGCTGCGACTGCCGCCTGGGCGAGGTCGGCTCCACCCTCTACACCAAAGCCAATCTCATCCTCTGTCGCAGAGACTACCTGAGGCTCTTCGGGACGACGGGGAACTGTGCAGCCTGCAGTAAACTGATCCCCGCGTTTGAAATGGTGATGAGGGCCAGAGATAATGTTTACCATTTGGACTGTTTTGCCTGTCAGCTTTGTAACCAGAGGTTCTGCGTAGGCGACAAGTTTTTCCTAAAGAACAACATGATCCTGTGTCAGATGGACTATGAGGAGGGCCAGCTCAACGGCAGCTTCGAGACGCAGGTCCAATAACGCCAACCTGGCGGaggcagcagcacacacacacacacacacacacacacacacacacacacacacactcacactcacacacacagggaggagCGTCTGTCTGCTTGCCTGCAATACTTTTTACAGTAAAAGAAGCCCTCGTTGGTCCTTTAGGACTCTGGTGTAAATGTTCTACTTTTTGGCCTTTTCCTCGACTCGAGCATTTATAAGTTCTGATGTACAGTCGTGCCTGCGTCGCTGAGCACCGTATCGCCTGTAtgggtttttgtgatgttttttcttttattcctcaTTCCTCACGGTTAGGATGGTAAGATGGAGGCTGATGtacagtctgtttttttctgtatatatatataaactggaacatttattttatgaaattgtAATGCAATTTTATTACTAGTGtgaattaaagaacaaaacacgATTCTTAAATGTT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24098 LMO1_3; rhombotin-1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205566 lncRNA downstream 32686 263184 ~ 266538 (-) True G173639
TU205512 lncRNA downstream 83763 155542 ~ 215461 (-) True G173586
TU205619 lncRNA upstream 120056 455864 ~ 456185 (-) True G173685
TU206042 lncRNA upstream 170974 506782 ~ 519973 (-) True G174054
TU206069 lncRNA upstream 232605 568413 ~ 569242 (-) True G174074
TU206125 lncRNA upstream 460586 796394 ~ 798832 (-) True G174127
TU206147 lncRNA upstream 487831 823639 ~ 823896 (-) True G174147
XM_034308875.1 mRNA downstream 26652 267730 ~ 272572 (-) True ric3a
XM_026930344.2 mRNA downstream 203094 45726 ~ 96130 (-) True pde3b
XM_026930347.2 mRNA downstream 265058 30351 ~ 34166 (-) False calca
XM_034308876.1 mRNA upstream 112809 448617 ~ 470183 (-) True stk33
XM_026930391.2 mRNA upstream 138023 473831 ~ 480942 (-) True rerglb
XM_026930625.2 mRNA upstream 150837 486645 ~ 511403 (-) True trim66
XM_034308877.1 mRNA upstream 178348 514156 ~ 584811 (-) True dennd2b
XM_034308477.1 mRNA upstream 256995 592803 ~ 602182 (-) True tmem9b
TU205424 other downstream 265092 30281 ~ 34132 (-) True calca
TU206214 other upstream 625688 961496 ~ 963078 (-) True G174207
TU206257 other upstream 721848 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1311521 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 2266606 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2418547 2754355 ~ 2756525 (-) True G175048

Expression Profile