RNA id: XM_026930737.2


Basic Information

Item Value
RNA id XM_026930737.2
length 2258
RNA type mRNA
GC content 0.44
exon number 3
gene id fgf4
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4524986 ~ 4529727 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCTCCCCGTGATGCGGCGCTTGACGCGTGATGTAATTTCTCCACACGCATAAATATAGTTTGTCGGGGCTGAAAAAAGCACGGCATGGCTGAGTTTTGGTGCTGAGCTGTGGTCAAGTCACTCCGGACCTGCAAACTTGGACTCGAGTGTGATTTCAGGGCGCTCGCGCTACCACATCGAGCGCGACTTCATGTCGCTCAACAGCGCGAGCCGCGGCTTCGCCTGTGAGTAAGCGCTTTTGCTCTGTGGAATCTTTTCTGGGGGGCGGCGAGGGGGGACAGTGGACACCAAAATAGACAAAGAGCGTATTTTTAGCGTATTTGAACTCCTGCAGACAGTGACGCGTGCCTCCGTGTTGGTCAGGAGGATGAGTGCTCATTCGGCCCTCTTGCCGTTACTGGTGTTGGGACTCGTGGCGAGCTCGGTGCGCTGCGCTCCGCTGCCCGTGGATCGACGCTGGGAGACTCTTTACTCGCGCTCTTTGGCCCGGATTCCCGGGGAGAAGCGAGAAGTCAACCGGGACAGTGACTATCTCACGGGCATTAAGAGACTGCGGCGCCTCTACTGCAACGTGGGCATTGGGTTTCATCTCCAAGTATTACCCGACGGTAGGATTACTGGGGTGCACAACGAAAACCGTTACAGTCTTCTTGAGATATCTCCGGTCGAGCGCGGAGTCGTGACACTGTACGGCGTCCGGAGCGAGCTATTCGTGGCCATGAACAGCAAGGGGAAGCTCTACGGATCTGCGCAGTACACCGACGAGTGCAAATTTAGAGAGACGCTCCTGGCAAACAACTACAACGCGTACGAGTCTGTGGCATACCCGGGCATGTACATCGGACTGAGCAGGAcaggcaaaacaaaaaaaggaaaccgAGTGTCAACAGCAATGACGGTGACACATTTCTTGCCGAGAATCTAAACGAACACGGGAAGAAGGCACGAGACATGCAGCCAGTGCGGGGGGGAAACCCGGACGATGCACTTTCTCCAAATCTTACACACGAGGTCAAGTGTATCGCATTATTActctcttcttcatcatcatcatcatcatcatcaacatcaacatcaacatcatcatcatcatcttcatcatcatcattattattattatcatgtaTATTAGCTTATTTATAATCGTTCGTTTTATATTTCCTTTTAAACAGCCTCTTTCTACgtgtggaaaaaaacacttttaatttatttgtttatttatccttTCTGCTGCTACCGAGTGTTTAATACCTGAAATTCCTACAATTAACTACAATATGgatttttgcactgttttttttgttttgttttgttttgtttgtttgtttctttctttaaggTTAAAAAGAGGAGTGATGGATGCTCTATCCCTCGAAAAGAAAGTGTACTACATCTTAGGCTACGTCTAAAACCGCATATAACCACAGCAAACCACACCTACTGCGCATGCGTGAAAGCTGACGCATGCAAGCTACTATTTTGACCTACTGTTTAGTATGCGTTTTGGACATAGCCTTATGGTGGAGTGCATGTCATGTCGAAAAATGAGCAGAACTCGTCAATATGACTTGGACATATTTATTCTTATAATTACTATTGGCTATGAGTTGTGATGCTGCAGCTAGGTGTAGTCTaattagtgatttttttcagcagttaAGACTTGGGAATATAAAGCAAATCATTGTGGGAAAACCTTACACCATCTACTgtctcagaaataaatgtaacaaactgTATTATTCTTGTCAcatttgtacctttagtatgtatcttttacttGGGAAGGTGCATGTGCTGTACCTTTAATTGATCTTTAGAGTAAAAGGACATCAttccttaaggtccaattatgtaccttataATATGCTTAAAggtataataatacatattaatgGTACAAAAGATGATGGTACCACTCCAGCGACAAGCAAGAGATCAGTTTGGTCCCATTATTTCTGagattgtattttgtattttgtttgctTATAGACAGTTTGATATAAGTACTTGAACATGCTCCAAGTCATATTCATGACTTCCAAAGTGGCATATGTGAATTGCAGGATTAGCATGAACACAGGATTAGTTCAAGTTTCTTGACTTGTGAAATCATACCAACCCCAATGGTATTACGCACTGAAGCCATTGTCCAATGTCTGAGCTCTGGGGGTCTAACCGAAACAGTATCGGCTTACTCTAGGCCACTGAAAGTGGGCTGTTGAAGTCCTACACCCCTCAAATCTGTTTTTAGCT

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208186 lncRNA downstream 20665 4499478 ~ 4504321 (-) False lto1
TU208115 lncRNA downstream 225118 4298977 ~ 4299868 (-) True G175854
TU208008 lncRNA downstream 387107 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA downstream 438793 4083972 ~ 4086193 (-) True G175775
TU207893 lncRNA downstream 602045 3922313 ~ 3922941 (-) True G175676
TU208239 lncRNA upstream 92401 4622128 ~ 4622987 (-) True G175963
TU208248 lncRNA upstream 100621 4630348 ~ 4632785 (-) True G175967
TU208311 lncRNA upstream 202655 4732382 ~ 4736416 (-) True G176015
TU208331 lncRNA upstream 310261 4839988 ~ 4840693 (-) True G176028
TU208332 lncRNA upstream 311021 4840748 ~ 4847141 (-) True G176029
XM_026930795.2 mRNA downstream 12787 4509420 ~ 4512199 (-) True fgf19
XM_026930851.2 mRNA downstream 20657 4498946 ~ 4504329 (-) True lto1
XM_026930361.2 mRNA downstream 245401 4269174 ~ 4279585 (-) True dhcr7
XM_026930923.2 mRNA downstream 323076 4192128 ~ 4201910 (-) True LOC113536783
XM_026930740.2 mRNA downstream 343238 4172771 ~ 4181748 (-) True LOC113536655
XM_026930757.2 mRNA upstream 7195 4536922 ~ 4541112 (-) True fgf3
XM_026930626.2 mRNA upstream 57276 4587003 ~ 4597773 (-) True zgc:153993
XM_026930525.2 mRNA upstream 126879 4656606 ~ 4688578 (-) False pacsin3
XM_026930523.2 mRNA upstream 126879 4656606 ~ 4688576 (-) False pacsin3
XM_026930522.2 mRNA upstream 126879 4656606 ~ 4688576 (-) True pacsin3
XR_003403708.1 other downstream 424560 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 425135 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 428216 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 429724 4095207 ~ 4095262 (-) True LOC113536799
XR_003403701.2 other downstream 472219 4052589 ~ 4052767 (-) True LOC113536791
TU208693 other upstream 550090 5079817 ~ 5080895 (-) True G176307
TU208689 other upstream 609883 5139610 ~ 5190522 (-) False trip4
TU208736 other upstream 662237 5191964 ~ 5196818 (-) False trip4
trnai-uau_1 other upstream 760775 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 784435 5314162 ~ 5314254 (-) True trnai-uau_2

Expression Profile