RNA id: XM_026930740.2


Basic Information

Item Value
RNA id XM_026930740.2
length 2645
RNA type mRNA
GC content 0.39
exon number 14
gene id LOC113536655
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4172771 ~ 4181748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaacaagcaaaagaaATGATACAACAACATCTTTCCAGTTGAGCTTTTTGGTTTTGCATGAGATTTTGcagagagctgctgttatgaaaCTCGTCTACTTTACGGTTCTGTTGGTCTTTGGAGCTAATGCTAATGGCTGTAATCCATCAAATGTACTTGAGgGAACAGAGAACAGTTTCTTCTACAAAGGAACAGAATTTGTAATTACAGAGAACCTTACTACATCACTCTGCAAATGGGGAAGCTTCCAGTGTTATGCAGAGTGCACCTCTGTCAGTCTCACCACAAACATAACGAGTCTGAACAACTTGACGAAACTGATACAAAATCATACAATAACAGGTCAAAACACTCAGCTAGTCTTCGACATGAGTGAGAAAAATAGCACATGTAATGTCATAAAGTGTAAATCAGATGAAATGAATGCATTTGTCCTTGAAACGGATGAAAAAAGACTAAACGAAGTACAAAAGATGTGCAAATCATTTCCTTTAGATATACGCATCAGGGCAGAGAAAAGGTTCATCCATAAGCTCATCAACATACCATTTAATGGAACAACCAAAACCTATGAGGGAGAGAACTTTAAAATGACTGTAGTTAAGATGGATATGATGAACACCATGGATCAAACGCCTGTACATATCTCTGCTCCAAAGCTGTCTGATGATGATCCAACCATAGATGTATTCGTCCCTATTGAACCATTTCTGACTGTGTCAAAGGAGCAGTGCAAAGTTGGTGTAGTGACATATCACTCTGCTCAACAGTTTACAAAGAGTGATTCAAGCAATGGGTTGAGATCTAAAGTCATTCGTGTTGAAACTGTTGGACATGAGCTTAAGGACTTATCGAATCGTCTTGTTATCAATTTTCCAGTAAACATTAGTGAAGTAATCCTTGAAAACCACACGCTGTCATGCCAGTTCTATAATGAAACAGATAACAAGTGGAATGACATGGGGTCATTCACCAACCTGGAGAACTTTAACAGCAGAAACACTGTAAACTGTTCATATGATCATATGACCCCCTTCGCTGTACTTCTGGTTGACGTGGCACAAATCAATGCTCAGCAGTGGAAAATCCTGTCCTATATTAGTTACATAGGTTGTAgtctttcatcttttttctcAGCAGTCACCATCTTCCTCTACGTTTTCATGAAGAGCTCAAACAGAGACAGTTCCATCCGTATCCATGTGTCTTTGAGTGTAGCCCTTTTCCTCCTCAACACCAGCTTCTTGTTCATCGAATGGGGAGCCACTTGGTCTCATGACAGTGTGTGCGTCTTTATAGCAGTGATAATACAGTACAGCCTCCTGTCCTGTTTCTCTTGGATGGCCATTGAAGCCATACACTTGTACTTGCTTCTAATCAAAGTGTTCAACACCTACATCAATCACTACATGATCAAGCTGTCCCTGTTTGGATGGGgagtGCCTGCTGTCCTTGTTGGaggaagtctgtgtgtgtttggcagtaAGCCCTTTTATGGCCCCACACCAGTGATATTATCTAACTCAAATGAAACAACTAATTTATGCTGGATTACTGACATTCGCTTTCTGTATGGCATGAACATCCCCTACTTCTCATTAACATTCCTGTTCAACACATGCATTCTGGTGATAGTAACGCATCAGATCTTTAAGCTGCGATGCTTGAATGTCAGTAAGCTCCCATCCCATAAGGACATTTGCACTGTCCTAGGTCTGACCTTCCTCATGGGAATGACATGGGGTTTGGCTTTCTTCACCTCAGGTTACACCAACTACTTCATTCTTTACCTCTTCTGCATCTGCAACAGCCTGCAAGGGTTGTTTCTCTTCCTGTGGTTCTACAGTACAACGAAGAAGAACAGGCGTCTGAAGGCACAATCCTCAAATACGTCCGAGCCAGCCAGTGCTACACTCAAGTCTTATAAAAGCAGCTTTTCCTACTGATCAGATATTACGTGTCATTTTCTGGTGATGTGGTTATACATCATATACTGATAGATATTAAGACAGGAACAGAAACAAGTTATACAAGTTATTTAAAACTTACTTCATCACCTCACTCCATAACCCATCAGCAGTTTCAATATCAGTTGCACGCTGTTGTTCACTTTTTCCATTATGAGCCAGAGTTCCTTATTATCAACACTACAAAAGTACATTGTTTTGTAGAAGATATAGTGTGTATAACATGTATAATGATCCAGTACGTTTTAGACTGAGTACTTATTAATTCTTCATCACCTCCACTTTTGACTactctgatctgatctgatatTTTGGGTTTTCATATATAACCTTATCCTTAAACTACTTTAAAgaaattgtgttttgttgtgtatgTGATCACAGTGTATATTACTTTTAATATGATTATACAGCTCTCATACTGTGTTAAAGAGATGCTGTGATACTATGTAGTGACTCGAACCCTTATTCTTTGAACTAATATCAGAGCAGCCCCTGCTGGCCATACTGGACATTAACTTCACTTGTGGATGTGGTTGGAATAGGATGGACAAATTGTTCTTGGAACAGCAAAGCAATATGAATTTCATCTGTACTTTTACTACCTTAAAGTTAAATGTAAGCAGTCCACTATAAACCATAATCTAGATATAATTATATTTGCGAACAtaaatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208008 lncRNA downstream 34892 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA downstream 86578 4083972 ~ 4086193 (-) True G175775
TU207893 lncRNA downstream 249830 3922313 ~ 3922941 (-) True G175676
TU207812 lncRNA downstream 353241 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA downstream 376846 3795679 ~ 3795925 (-) True G175611
TU208115 lncRNA upstream 117229 4298977 ~ 4299868 (-) True G175854
TU208186 lncRNA upstream 317730 4499478 ~ 4504321 (-) False lto1
TU208239 lncRNA upstream 440380 4622128 ~ 4622987 (-) True G175963
TU208248 lncRNA upstream 448600 4630348 ~ 4632785 (-) True G175967
TU208311 lncRNA upstream 550634 4732382 ~ 4736416 (-) True G176015
XM_026930855.2 mRNA downstream 13575 4145852 ~ 4159196 (-) True adgrg3
XM_026930512.2 mRNA downstream 111928 4040364 ~ 4060843 (-) True ipo7
XM_026930867.2 mRNA downstream 154977 4007408 ~ 4017794 (-) False bco1l
XM_026930923.2 mRNA upstream 10380 4192128 ~ 4201910 (-) True LOC113536783
XM_026930361.2 mRNA upstream 87426 4269174 ~ 4279585 (-) True dhcr7
XM_026930851.2 mRNA upstream 317198 4498946 ~ 4504329 (-) True lto1
XM_026930795.2 mRNA upstream 327672 4509420 ~ 4512199 (-) True fgf19
XM_026930737.2 mRNA upstream 343238 4524986 ~ 4529727 (-) True fgf4
XR_003403708.1 other downstream 72345 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 72920 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 76001 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 77509 4095207 ~ 4095262 (-) True LOC113536799
XR_003403701.2 other downstream 120004 4052589 ~ 4052767 (-) True LOC113536791
TU208693 other upstream 898069 5079817 ~ 5080895 (-) True G176307
TU208689 other upstream 957862 5139610 ~ 5190522 (-) False trip4
TU208736 other upstream 1010216 5191964 ~ 5196818 (-) False trip4
trnai-uau_1 other upstream 1108754 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 1132414 5314162 ~ 5314254 (-) True trnai-uau_2

Expression Profile