Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026930757.2 |
| length | 2251 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 3 |
| gene id | fgf3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 4536922 ~ 4541112 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0021571 | rhombomere 5 development | biological_process |
| GO:0021572 | rhombomere 6 development | biological_process |
| GO:0030177 | positive regulation of Wnt signaling pathway | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:0043049 | otic placode formation | biological_process |
| GO:0051216 | cartilage development | biological_process |
| GO:0043066 | negative regulation of apoptotic process | biological_process |
| GO:0051781 | positive regulation of cell division | biological_process |
| GO:0048840 | otolith development | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0050769 | positive regulation of neurogenesis | biological_process |
| GO:0021703 | locus ceruleus development | biological_process |
| GO:0048920 | posterior lateral line neuromast primordium migration | biological_process |
| GO:0048665 | neuron fate specification | biological_process |
| GO:0021984 | adenohypophysis development | biological_process |
| GO:0030878 | thyroid gland development | biological_process |
| GO:0045666 | positive regulation of neuron differentiation | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0030901 | midbrain development | biological_process |
| GO:0030335 | positive regulation of cell migration | biological_process |
| GO:0048709 | oligodendrocyte differentiation | biological_process |
| GO:0060059 | embryonic retina morphogenesis in camera-type eye | biological_process |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005104 | fibroblast growth factor receptor binding | molecular_function |
| GO:0008083 | growth factor activity | molecular_function |
| id | description |
|---|---|
| K04358 | FGF; fibroblast growth factor |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU208186 | lncRNA | downstream | 32601 | 4499478 ~ 4504321 (-) | False | lto1 |
| TU208115 | lncRNA | downstream | 237054 | 4298977 ~ 4299868 (-) | True | G175854 |
| TU208008 | lncRNA | downstream | 399043 | 4076144 ~ 4137879 (-) | True | G175767 |
| TU208017 | lncRNA | downstream | 450729 | 4083972 ~ 4086193 (-) | True | G175775 |
| TU207893 | lncRNA | downstream | 613981 | 3922313 ~ 3922941 (-) | True | G175676 |
| TU208239 | lncRNA | upstream | 81016 | 4622128 ~ 4622987 (-) | True | G175963 |
| TU208248 | lncRNA | upstream | 89236 | 4630348 ~ 4632785 (-) | True | G175967 |
| TU208311 | lncRNA | upstream | 191270 | 4732382 ~ 4736416 (-) | True | G176015 |
| TU208331 | lncRNA | upstream | 298876 | 4839988 ~ 4840693 (-) | True | G176028 |
| TU208332 | lncRNA | upstream | 299636 | 4840748 ~ 4847141 (-) | True | G176029 |
| XM_026930737.2 | mRNA | downstream | 7195 | 4524986 ~ 4529727 (-) | True | fgf4 |
| XM_026930795.2 | mRNA | downstream | 24723 | 4509420 ~ 4512199 (-) | True | fgf19 |
| XM_026930851.2 | mRNA | downstream | 32593 | 4498946 ~ 4504329 (-) | True | lto1 |
| XM_026930361.2 | mRNA | downstream | 257337 | 4269174 ~ 4279585 (-) | True | dhcr7 |
| XM_026930923.2 | mRNA | downstream | 335012 | 4192128 ~ 4201910 (-) | True | LOC113536783 |
| XM_026930626.2 | mRNA | upstream | 45891 | 4587003 ~ 4597773 (-) | True | zgc:153993 |
| XM_026930525.2 | mRNA | upstream | 115494 | 4656606 ~ 4688578 (-) | False | pacsin3 |
| XM_026930523.2 | mRNA | upstream | 115494 | 4656606 ~ 4688576 (-) | False | pacsin3 |
| XM_026930522.2 | mRNA | upstream | 115494 | 4656606 ~ 4688576 (-) | True | pacsin3 |
| XM_026930524.2 | mRNA | upstream | 115494 | 4656606 ~ 4670231 (-) | False | pacsin3 |
| XR_003403708.1 | other | downstream | 436496 | 4100371 ~ 4100426 (-) | True | LOC113536798 |
| XR_003403707.1 | other | downstream | 437071 | 4099795 ~ 4099851 (-) | True | LOC113536797 |
| XR_003403699.1 | other | downstream | 440152 | 4096714 ~ 4096770 (-) | True | LOC113536789 |
| XR_003403709.1 | other | downstream | 441660 | 4095207 ~ 4095262 (-) | True | LOC113536799 |
| XR_003403701.2 | other | downstream | 484155 | 4052589 ~ 4052767 (-) | True | LOC113536791 |
| TU208693 | other | upstream | 538705 | 5079817 ~ 5080895 (-) | True | G176307 |
| TU208689 | other | upstream | 598498 | 5139610 ~ 5190522 (-) | False | trip4 |
| TU208736 | other | upstream | 650852 | 5191964 ~ 5196818 (-) | False | trip4 |
| trnai-uau_1 | other | upstream | 749390 | 5290502 ~ 5290594 (-) | True | trnai-uau_1 |
| trnai-uau_2 | other | upstream | 773050 | 5314162 ~ 5314254 (-) | True | trnai-uau_2 |
