RNA id: XM_026930759.2


Basic Information

Item Value
RNA id XM_026930759.2
length 2560
RNA type mRNA
GC content 0.44
exon number 10
gene id slc38a8b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1138521 ~ 1147976 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAGCCACGAGCCACGGGTCACAGGTCACGTCAAAACTAACAGATCATTTCAACATTTCTCACCTGAGCGCGACATTTTTTTGGTATAAGTGCCTTAACCTGGAGCGCGCGCTCTATATGATGAAGAGCCGGTTGGCTGTTGGGGTGGACCGGACCGGACCGACTCCGCACGCGCACACTGCTCGCTGCCAGCTGCACTGCCGGTTGCATTCCCCGATTCCTCCCCGCCCCGTCCCGTCCCGGTGTGGAGAGCTGAGCGCGAGGCAGCATGGAGGAACTGGCGCGTGAGAGCATCCGCAGCATCAGCCTGCTGTACAAACCGGCGCGAGGCACCGAGGCACCGCGTCTCGGCTCCTTCGGTGCGGTTTTCATCATGCTGAAGTCTGCACTCGGAGCCGGACTCCTCAACTTCCCCTGGGCTTTTGAGAAGGCAGGAGGTGTGAGCAGAGCCATCAGTGTAGAAATGGTGTCTCTGATATTCCTGATCAGCGGCCTGGTCATCCTCGGCTACGCCTCGTCCATCAGCCGGCAGAGCACATATCACGACGtggtgagagaagtgtgtggcCGCAGGATCGGTTATCTCTGTGAGGTCTGCTTCGTCTTTAACCTCTTCATGATCTCTGTGGCGTTCCTCGTGGTGGTGCAGGACCAGCTGGAGAAGTtgtgtttgtcCTTATATGAAATGGTGACTGGAGCAAAAGTGATGCCCTATCACTGGTATACAGATCAGAGCTTCGCACTCTTCATCGTGTGCCTCGTCATCATCCTCCCTCTGTCCATCCCCAAAGAAATCAGCATCCAGAAATACACCAGTGTGTTAGGAACTCTAGCTGCTACGTACCTCAGCGTGGCTGTAATCGTTAAATATTACCTGGAAGAGGAGCACACCGCAGATCTCCGTCCTCAACACACAGGGTTAGACTCGTGGGCCTCCATGTTCAGTGTCGTTCCCACCATCTGCTTCGGCTTCCAGtgccATGAAGCCTGCATTGCTATTTATAGCAGCATGGAGAACAAAAAGATCAGTCACTGGGTCTTCATCTCTGTGACGTCCATGATCTTCTGCCTGCTCATCTACACTCTCACAGGAGTGTTCGGTTTCCTCACATTTGGACGTGGAGTGGCGTCAGATATCCTGATGTCATATCCTGGAAACGATGTGGTGATGATCATCGCGAGGCTGCTGTTTGGCATCTCAATCATCACAATCTATCCCATAATACTTCTCCTGGGCAGGACCGTCATCCTGGCGTTGATGCTGCGTTACCAGGAGCGACGCGCCATAGTTACGGTGGCGTTCGAGTGCCGCTGCCGAGTTCTTCTGACCGTCCTGTGGATCGCCGTGACGCTTCTCATCGCTGTCTATGTTCCAGATATGAGTGACGTCATTAGTGTGATTGGAGGAATCAGTGCCTTCTTTATCTTCATTTTTCCTGGGCTGTGTCTCATTTTTGCCATGCAGACGGAAGCATTAGATCACAGATTAAAgATGTTCCTGACAGGATGGGGCGTCATCACTGTTGTCGTTGGAACCTTCATCTTTGGCCAGAGTACCACCATCGCTGTCATGGAGCTCATACACAAGGcttgatcatcatcatcatcatcgtcatcatcatcatcatcatcatcatcatcatcatcatcatcatcattcttcatcatcattgtattatttattattattattaattatataagaaagtaaataaagacAGGCTGACTCTGTAGTGGAGGAATTCTTCCTACTTACGTCTAACATCCACCTTTTTATTGTTTCTGAGTAGAAATAATGAGCAATTTAAAGaattcagaaatatatttaattaaattctctAACATGAGAATAAATTAATCGAGCATTGGATTGAGTGTTAATACTTACACTGATTATAGAGAATGGAAATTTTCCCACTTTCGGACGTTTcctaaacaaaaagaacattttaactCGGTGACTGAGGATCGTTTTTGATTGGATACAGcaacaaaaattttattttttatttttatttattgttttaatttacaGATACATTGAGTAAAATCCTACAGTAAAAGGACGGCATTTTGGATGGTGGAATTCAGTGTAATTGTAAGCTGTGTTGATCAGctaaaatgagaatattttttgttttttattattattattattattattgatattattattgatgCCATTGGTGATAttgttactgtatataataaaagaaatgttcCAAAATGTCTATACTGTGACAAATTTTatcaaatgtctgaaaaaaataaaatagtatttCCAAAGTCACGCTGTTTTTAAAGCTATGTTCTTCATCAACATCTTCTACGTTATTTCTTAAGAGTTACAAATATTTCTTTTGTGATATCTTGTTGTACAGTTTATCTACGAGTCTCAAGACAATACAAAATTGTGTGATTGTTGTTTATTTCAATTTGTGATTCTTTCACCTTGACCTCGGGCTGTAAATCTGACACGATTTCATGATgatattaatgatttttaactGAACAAAAGCTTGCCCTTTTTTCAGACAAACCATATTGACTATATTTTTCT

Function

GO: NA

KEGG:

id description
K14994 SLC38A7_8; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 7/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206256 lncRNA downstream 81614 1056698 ~ 1056907 (-) True G174246
TU206255 lncRNA downstream 81896 1056188 ~ 1056625 (-) True G174245
TU206254 lncRNA downstream 84079 1053164 ~ 1054442 (-) True G174244
TU206253 lncRNA downstream 88715 1049305 ~ 1049806 (-) True G174243
TU206186 lncRNA downstream 90798 1046060 ~ 1047723 (-) True G174183
TU206348 lncRNA upstream 186784 1334760 ~ 1337021 (-) True G174319
TU206351 lncRNA upstream 233341 1381317 ~ 1384518 (-) True G174322
TU206354 lncRNA upstream 262021 1409997 ~ 1414190 (-) True G174325
TU206358 lncRNA upstream 271393 1419369 ~ 1419745 (-) True G174329
TU206375 lncRNA upstream 317518 1465494 ~ 1469982 (-) True G174345
XM_026930545.2 mRNA downstream 818 1131031 ~ 1137703 (-) True aph1b
XM_026930712.2 mRNA downstream 135883 999059 ~ 1002638 (-) True fbxl8
XM_034308882.1 mRNA downstream 186192 951385 ~ 952329 (-) True LOC117598426
XM_026930497.2 mRNA downstream 203425 932231 ~ 935096 (-) True thap11
XM_034308880.1 mRNA downstream 225354 908291 ~ 913167 (-) True nrn1lb
XM_026930733.2 mRNA upstream 80 1148056 ~ 1159962 (-) False tmppe
XM_034308821.1 mRNA upstream 93 1148069 ~ 1159962 (-) False tmppe
XM_026930732.2 mRNA upstream 5105 1153081 ~ 1159962 (-) True tmppe
XM_034308751.1 mRNA upstream 176675 1324651 ~ 1497726 (-) False sox6
XM_034308752.1 mRNA upstream 176675 1324651 ~ 1497726 (-) False sox6
TU206257 other downstream 79287 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 175443 961496 ~ 963078 (-) True G174207
TU205424 other downstream 1104389 30281 ~ 34132 (-) True calca
XR_003403705.1 other upstream 499353 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1454438 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 1606379 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 1990851 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 1992094 3140070 ~ 3140161 (-) True LOC113536794

Expression Profile