RNA id: XM_026930773.2


Basic Information

Item Value
RNA id XM_026930773.2
length 1614
RNA type mRNA
GC content 0.40
exon number 3
gene id clec3a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3954997 ~ 3959953 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCCTTGTTTTTGGAGCTCACACTCCAACTCGACATTTTCAGCCAATAAGCTGGAAGTCTGAATGTTGAGCGCTGGTATGTATTTGGTGAGCTGTCCACTCTCTCAGGGGCTTCTTGTACTCGTATAAATGTAGCCTCTGTGTGAGCTGACTGCTTTCTCACAGTAGCCATGGCCTTTCCTCACTTGTTTCTTGCCTTCTTGGTGTCTTGCACCCTGCTTCATCATGGATGTGCTCGTCCTTCCCGCTCCAGGAAAGCTGCTGCAGGTCAAGAAGATGACGATATGAAGGCACAAATTGATAAACTATGGCAGGAGGTGAACTCCTTGAAGGAGATGCAAGCCCTGCAAACAGtttgtCTTCGTGGTATCAAAGCTCACAAGAAGTGTTACCTGGTCGTTGAAGAACCCAAGCATTATCATCAGGCCAATGAGGACTGCATTGCTCAAGGTGGAACCTTGGCCACACCCCGAAACCTGAGGGAAAACAACGACCTACGAGCCTACGCCAGACTCAGCTCCCCAGGCACCAAAGACTTCTGGATAGGTGTGACTGATATTGTTAAAGAAGGCCAGTACGTCGATGTCAACAGCATGCCCGTCACCTACTTCAACTGGGATCGTGCCAAGAAGGAGCCGACAGGAGGAAAACGAGAGAGCTGTGCTGTGCTCTCGCTCTCGGCACAGGGCAAGTGGCATGACGAGGTGTGTCGCACTGAGAAGAGATACATATGTGAATACCTCATTCCTTAATATGAAGTTAATATTCAACGCGCTATGCGTGATGACGGTGTCATCACTGATGCTGGTTATTAATGCTGTCTAAGGATGCAACATCATGTTCCACAtatttgctgtagcattaaacgTCTGGTCTGAGACTGACTGCGGTCTGTGCAAAATCACATCTTTATTATctatattattgtttttcaaTATTTAGAGTAACATACACAAGGTTGTAACAGGAATACAGTCTTAACAGTACATATCTTCTTTGCAAaattggctctgtgtgtgtgtgtgttcattttttcactttctggTATTTTCTGCGTATGCATATTAGGTCCCCATTAATTACTTTGTTGTTATTTCCcaataatgtgttaaaaaacagacaaagaaaTTTACTCATTTGAATTCAGAATTTGAGGTCATATTTGAatactttttttcacatctgGATCACAGGAAAGTCATGTCCTCAGAAAGCATTTTTGGGTCTTGTGTCCCCACAATGTTATAAGtacaagaatgtgtgtgtatgtgctatttttttttcactttcttaccctgttttttttttttttttctaatctgtcCTCATGCCTGCTTTAACTTAATATTACATATGTATTACTATTATCAGTGATTggtctacttaaaaaaaaagacatttttggtATCATgtcacactgcaacacagaccTACATTCCACCCTTAATTTAACTGAATggatataatacaataaaatgtttcacaaaatatgcaaatatatgtaaagatgaaatatgtatataaataaaaacaaattgttaTTGGTTGGTTACACGGCAGAAACAGTACAACATAGGCCtccatttccacacacacacacacatatatatatat

Function

GO: NA

KEGG:

id description
K17519 CLEC3A; C-type lectin domain family 3 member A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207893 lncRNA downstream 32056 3922313 ~ 3922941 (-) True G175676
TU207812 lncRNA downstream 135467 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA downstream 159072 3795679 ~ 3795925 (-) True G175611
TU207665 lncRNA downstream 373026 3549865 ~ 3581971 (-) True serf2
TU208008 lncRNA upstream 116953 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA upstream 124781 4083972 ~ 4086193 (-) True G175775
TU208115 lncRNA upstream 339786 4298977 ~ 4299868 (-) True G175854
TU208186 lncRNA upstream 540287 4499478 ~ 4504321 (-) False lto1
TU208239 lncRNA upstream 662937 4622128 ~ 4622987 (-) True G175963
XM_034308620.1 mRNA downstream 2847 3924247 ~ 3952150 (-) True usp47
XM_026930435.2 mRNA downstream 2847 3925644 ~ 3952150 (-) False usp47
XM_026930436.2 mRNA downstream 2847 3925644 ~ 3952150 (-) False usp47
XM_034308622.1 mRNA downstream 45104 3851847 ~ 3909893 (-) False mical2a
XM_026930830.2 mRNA downstream 45104 3851847 ~ 3909893 (-) True mical2a
XM_026930724.2 mRNA upstream 3639 3962830 ~ 3989596 (-) True vat1l
XM_034308466.1 mRNA upstream 33791 3992982 ~ 3996453 (-) False bola3
XM_034308467.1 mRNA upstream 33791 3992982 ~ 3996453 (-) False bola3
XM_026930790.2 mRNA upstream 37872 3997063 ~ 4005076 (-) False bco1
XM_034308983.1 mRNA upstream 37872 3997063 ~ 4003519 (-) True bco1
XR_003403696.2 other downstream 45106 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other downstream 45108 3855191 ~ 3909889 (-) False mical2a
TU207666 other downstream 382735 3569341 ~ 3572262 (-) True G175497
XR_003403706.2 other downstream 653727 3301139 ~ 3301270 (-) True LOC113536796
XR_003403704.2 other downstream 814836 3140070 ~ 3140161 (-) True LOC113536794
TU207939 other upstream 33535 3992726 ~ 3996433 (-) True bola3
XR_003403702.2 other upstream 89674 4048865 ~ 4049043 (-) True LOC113536792
XR_003403701.2 other upstream 93398 4052589 ~ 4052767 (-) True LOC113536791
XR_003403709.1 other upstream 136016 4095207 ~ 4095262 (-) True LOC113536799
XR_003403699.1 other upstream 137523 4096714 ~ 4096770 (-) True LOC113536789

Expression Profile