RNA id: XM_026930795.2


Basic Information

Item Value
RNA id XM_026930795.2
length 1590
RNA type mRNA
GC content 0.44
exon number 3
gene id fgf19
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4509420 ~ 4512199 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcgcgccaGAGCAGCCCAAACCCCACCATCTGTTGGATGTCCAGAAGGTGTGTTATGATCCCGTTCGCAGAAATTGCCAAAAGGGGGAAACGGCGGCTTATCGATTGAACTGATAAAGAGAAGCATTTAAGAGGCCAGATGTGCGAGGTCAAAACAAAAGAACACGACCGACTTGCACAAGCGAACAGTCACGCGCATCAAGCACCAGTCCTCGCGCCCTGGACCGCACATTAACAGGAATACCGAGACATGCTGCTCGTCGCTTTCCTCAGCGCGTGCTGGATCGGCGTCGCATTGGCCGACTCCGGACCACACCTGGCCAATGACTGGGGAGAGTCTGTCCGCCTGAGGCACCTGTACGCGGCAAGACCCGGTCTGCACCTGCAGATCAGCAAAGACGGGAAGATCGGAGGATCGCACGTGCAGAGCTCGCACAGTTTGGTGGAGATCCGCACCGTCGACACAGGCTGCGTGGTTATTAAAGGTGTCGCGAGCTCACAGTTTCTCTGCATGGAAGCCAACGGCAAGCTATATGGCTCGCACATCTATATAAAGGAGGACTGCTCTTTTCTTGAACAAATTATGCCAGATGGCTACAATATCTACTTCTCGGGCAAACACGGGACCCTCGTGAGCTTGGGTGGAGGGAAGAACCGACGTCAAAACTCTCTTGCTCAGTTCCTGCCCTTGCTCAATACTCTGCCACAGGAGCCTACAGAGTACAACATGAGAAAAGTGCATTCGCCAGTTGACCCAGAACAGGATCTTTACTTAGGCGTACAAGCAGACAGCATGGAATCCTTTGGGAAGATCTCCCAGATTGTCATTCAAAGCCCAAGTTTCAACAAAAGATGAGTAGAGTTCAAAGTTTCCAAAGATGTGACTCAGTTCAATCTCTTATGCAGAGGCAAGAGGCTGAACGGAACCAGTCTGTTCTGAAAGCAGAGcccagatgaacagacagaacTTACAGACGTGGGGAAAGAGGAGGATCAGGTTTCCCAAAGATCATTCTTAACCCCTGGTTGCACGGGTGGATTACACAGAATACGCTTCAAAGTAGTAGTTCAATACTACTTCAAATGTTAGATCACTCCAAATGTTGAGGCCCAAAGAAATGTATGAGCAGCttcttagttttatttatttctgaagatGATATTCACTGTTATGCCTAGTCTCTGTATCATatagtgctttttttctttttctttctttctttttttttttttactgtgcacTTGTATCTAAATTGTAATCTTTTTAGACTGGATTTTATATTTCTTGTATTTATCCTAGGCTGGACTTTATGAACTACTTTTGTTAGACtcaaacatgtttatttcttttaaagtctggttttaTAATGAAACTTAAACAATTCTTATGAGAAAAGATTGTGAAGAATTTAAAAGAATGCTAATCACACTCTATTTGTCGTGGATAAAATAACATGGAAATAGTTAGGATCACACATctataaaatgtacagtacatatgtATCTGTCATatgaatcaatcaataaaaACGTATAAGTGTAATGCAGGATGTTGATGATTAGTTTTGGATAAAACGAACCATAAATAAA

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0048665 neuron fate specification biological_process
GO:0007420 brain development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0048709 oligodendrocyte differentiation biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K22603 FGF19; fibroblast growth factor 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208186 lncRNA downstream 5099 4499478 ~ 4504321 (-) False lto1
TU208115 lncRNA downstream 209552 4298977 ~ 4299868 (-) True G175854
TU208008 lncRNA downstream 371541 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA downstream 423227 4083972 ~ 4086193 (-) True G175775
TU207893 lncRNA downstream 586479 3922313 ~ 3922941 (-) True G175676
TU208239 lncRNA upstream 109929 4622128 ~ 4622987 (-) True G175963
TU208248 lncRNA upstream 118149 4630348 ~ 4632785 (-) True G175967
TU208311 lncRNA upstream 220183 4732382 ~ 4736416 (-) True G176015
TU208331 lncRNA upstream 327789 4839988 ~ 4840693 (-) True G176028
TU208332 lncRNA upstream 328549 4840748 ~ 4847141 (-) True G176029
XM_026930851.2 mRNA downstream 5091 4498946 ~ 4504329 (-) True lto1
XM_026930361.2 mRNA downstream 229835 4269174 ~ 4279585 (-) True dhcr7
XM_026930923.2 mRNA downstream 307510 4192128 ~ 4201910 (-) True LOC113536783
XM_026930740.2 mRNA downstream 327672 4172771 ~ 4181748 (-) True LOC113536655
XM_026930855.2 mRNA downstream 350224 4145852 ~ 4159196 (-) True adgrg3
XM_026930737.2 mRNA upstream 12787 4524986 ~ 4529727 (-) True fgf4
XM_026930757.2 mRNA upstream 24723 4536922 ~ 4541112 (-) True fgf3
XM_026930626.2 mRNA upstream 74804 4587003 ~ 4597773 (-) True zgc:153993
XM_026930525.2 mRNA upstream 144407 4656606 ~ 4688578 (-) False pacsin3
XM_026930523.2 mRNA upstream 144407 4656606 ~ 4688576 (-) False pacsin3
XR_003403708.1 other downstream 408994 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 409569 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 412650 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 414158 4095207 ~ 4095262 (-) True LOC113536799
XR_003403701.2 other downstream 456653 4052589 ~ 4052767 (-) True LOC113536791
TU208693 other upstream 567618 5079817 ~ 5080895 (-) True G176307
TU208689 other upstream 627411 5139610 ~ 5190522 (-) False trip4
TU208736 other upstream 679765 5191964 ~ 5196818 (-) False trip4
trnai-uau_1 other upstream 778303 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 801963 5314162 ~ 5314254 (-) True trnai-uau_2

Expression Profile