RNA id: XM_026930842.2


Basic Information

Item Value
RNA id XM_026930842.2
length 5236
RNA type mRNA
GC content 0.44
exon number 16
gene id cpne7
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3075978 ~ 3128645 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tTCTCCGCGCGCGCTTTCCCacccttcctcttcctcctccctcactctctccaaCTGCGCGCTGAGTTTGGGAAATTTTCAGCAGCTCAGGAGGAAGCATTTGAGCCAGAAGTCAGCGGCGTCAGCAGGAGGGTTCCGCTGTGGCAGAGACAGCGATCTCATCCTAATGTTCCTCCAGAACAGCTCATGTGACATCTCCGTGTAACCCCACCTCAACCACAGAGAACCTGCGACAGAGATGAGCGCTTCTCCTGCTTCCTTAACCAGTGGATGTCTTTAAATCATCTCGATAGCTGTTCCTTTGCAAATTCCGACTCTCCCTTCTTTCCCTGTCCGCTCTCTCCGGTTGCTTTTGCACTCTTCCACACTGAGTCAGAATGAGTGAATCGCAGGAAGCGAGTTCTCCTGTGGCCGGGATCGGTGGCCCGGCGGCCTGCGTCACTAAAGTGGAGCTGCGAGTGTCTTGCAAAGCCCTGCTGGACCGCGACACACTGAAAAAGTCCGACCCCTGCGTCATCCTCTTGGTGCAGAGCCAAGGCCAGTGGACTGAGCTGGATCGCACTGAGGTGATCAAGAGCAACCTGAATCCAGTGTTTGCCAAAGTCCTAATGTTAGATTACTACTTTGAGGAGGTGCAGAAGCTGCGCTTCGAAGTCTACGACATTCACGGGACCCACAGCATCGGTACTCGCGATGATGACTTCCTGGGAGGGATGGAGTGCACACTCGGTCAGATAGTGGCTCAGAAAAAGATGGTGAAGCCATTGCTACTGAAATATGGAAAATACGCCGGAAAGTCTAACATTACGATTCATGCTGAGGAAATTTCTGGCAACAATGGATACGTCGAGCTCTCGTTCTGTGCCAAGAAGTTGGATGATAAGGATCTTTTCAGCAAATCCGATCCATTCTTGGAGATTTATCGTGTGAACGATGACAGCACAGAGCAGCTTGTACACAGAACAGAAGTGATCAAGAACAACCTGAACCCCGTGTGGCAGCCGTTTAAAGTCTCCCTCATTTCCCTGTGCAGCTGCGATGAGGACAGGAAGCTAAAGTGCCTGGTGTGGGATTATGACTCGAGAGGGAAGCATGACTTCATTGGCGAGTTTTACGCCACGTTCAAAGAGATGCAGCAAGTTTCTGGAGGAAACAAGGTCACATGGGACTGCGTGAACCCAAAATACAAAGTAAAGAAGAAGAACTACAAGAACTCTGGCCTGGTCATCCTCACGGATCTGAAGCTCCACAGAGTTTACTCCTTCCTGGACTACATAATGGGAGGATGCCAGATACACTTTACAGTTGCCATTGATTTCACGGCGTCAAACGGAGACCCCCGCAATAGCTGCTCCCTCCACTACATCAACCCGTACCAGCCCAATGAGTACCTGAAGGCTTTGATAGCTGTGGGTGAGATCTGCCAGGATTATGACAGTGACAAAAGGTTCTCTGCTCTGGGCTTCGGTGCACGAATTCCACCCAATTACGAGGTGTCGCATGACTTTGCCATCAATTTCAATccagatgatgatgaatgtgaaGAGATTCAGGGGGTGGTAGAAGCTTACCAGAACTGCCTGCCCAAGATCCAGCTCTACGGACCAACTAATGTGGCTCCTATAATCAGCAGAATAGGCAAGCAAGCAGCAGGGAAGGAGCCCATTAAAGACGCATCTAAATACCACATCTTGCTGATCCTCACGGATGGCGTGGTGACCGACATGGCGGACACGCGGGAGGCCATCGTGCGTGCCTCCTACCAGCCTCTGTCCATCATCATCGTGGGTGTGGGAAACGCCGACTTCACTGACATGCAGATCCTGGACGGGGATGATGGTGTCCTGCGCTCTCCTAAAGGAGAACCTGTCCTGAGGGACATTGTCCAATTTGTGCCCTTCAGAGACTTTAAAACGgcGTCTCCTGCTGCACTGGCGAAGTGCGTCTTGGCCGAGGTGCCCAAGCAGGTCGTCGAGTACTTCAGCCATAAGGCCATTCCTCCCATGAATCCTGTTTTAGACTCGACACCCAGCTCCATCGCCAACACCCCAGATTAACACGTCTACCCGAGTCCTGACCTCCGCTCTGTCCCTTCACACCTCCGAGTGCGAGATCCGAGAACAACCACCGCCACAAACACAACATTGCCGTTCCGTTTCCCTGTTTATACATAACGTGTTTACACAGAAGGAGGATTAGTTCTTCTTGGACCGTGTCCCGTGTTTGGCATCATGCCTACATCTTCATTATCTGTGCTGGAATCTTCATATGGACCTTCTCACCACAGTTCCAGGCCTCTGACCTGCTGCAAGCTCTCTGCAACTTCTCCGCCAAGGCCATCtcttaattcttaattctgatgtgtatttttttttaaatcctgtgcCTTGCAGGACCTTTTCAGTGTTTGCTCTGCCTGCCCACTGTGCTTATCTTCTTTGCCCCTGATTTTGTTCCTCGAGGCTTCTCGCTGGCCTCACACTACCCTGCTTTCAGCAAAAACAGACAGGATTATGTGTGGGGAGAATGGATGATCATGATCATTACTTGAAATTTATAAAGGTCTCTCCACAGATGGCTGGTCACGATATCTGTAACTCAGCATTACTTTTATGAAAGCATTATGGTTGAGCCTTATAGCATTGGATCCCCTCATAGGCATAAAACTATTGCgcatacacacaggaacacaggaaAAACAGAATGCTTGCCATTAGCTAGCTCTATCGctcaaaccacacaaaaaatATGTCATTTGTACTTTTATTGGACAATCCACCTTGTTCGTGTTTATTACACCCACAACTGTATTCCGTATGCACTCTTTCCATCACTGCTAATGACGTGTTATGGATGTGCCAGCAAAGCGGGCTTAAAAATGATGTACAGCCCTAATCCACATGAAATCTAGGGGATGTGTCAATCTCCTGACTGACTCACAACTGTCACTAATAgtctgcatgaatctacagtctgggctagaaagaattcagccccagcctcatttctcactttttcataccattctgtatgCTTTTCTAAGGACCTCTGGTCGTACTGTTGTGCTTGCTTCgacgaaaataatccactttaagccatttgttaacagcaaatcagaatACATAAGCCAAAAATCAGTCTTATGTATTTTTTCCATGGCAGAAAGAAAGGGCTTAGCCTAACTACCCCGTTTATATCAGCCGGCCTTGAAGGTatctttacatacagtatatctttacaatataaaaaaatatatatatatttggagaGGATCTGTAATGCGATGTGTAAACATGTCTAATCTAGTAGATCATAGCAAGATTATTAATTAagtctgaaagaaagaaatcatatCAGAAAGCGACCAAATGAGCAAAGctgcaattttaaaatgaattgttCTGGAAGAGTCTGAAATCTGAAACTGgtcaataattttttatttttttatttttttaacattgcatGTAGGTTGCAACTTAAAAAGACTTAGCATAACTTTTCCTCCAAACTCCTTAACATCTTTGGAGCATGTATCCAGCTTTTTTGACTGCCAGCGATACACGATTTCACAGATCAACCACAAGTCGATCTTTCTAGCAAGTCGAGCTTTCTATAAATGTTTGCTACACATAAAACCTCATTACATTAGACAAAAAACTAGTCCTGTTTGTTAATGCGTTCCAGTAGGAGGAATGGAGGAAAACAGCTAGCTTACTTAGACAGTTTAATATGGAAGGAATCAGGTTATTATTATTGGGATAAAGGAGTCCTGTAATGTGTTTTGTTCATCATATCATTAGCATTTTTGCTACCATGATATGCTCATCATTTTGCGAGTGCAGGCCACGCTGGCAAGTTACCGACATGAAAGGGGAGAACTCTGAGAACTTGCACTACTCTTGGGTAGAAGTTTTTGAATAGTAGGCAGGAGTTTTTGGACCTCTGCAAATATTCATCAAATTTTGAAGCAATTTGCTGCTTGACTTAATTTCCTACACTGTtagaaaaaatggttcttcaagggttctttggaagATTAACAGTTCAAGTCTCAACAGAAGCCtattgtgaaatggaaaccTACATAGAACATTGAGGGACTAAACTCTGACTCTTTAGGGTACCAGATTGGACCTTTTATttcctgtatactgtatgtgtctgAACATGACTGTATCAGTAAAACAAACACCACTGCCAGGTCTTTGGAAACCTAAGTCATCATATTAAGGCTACATAGACATATGCAGAATGGATAAACGCAGTGATTGTACCGTCAAAccattgttctgttttttgaGCACTGATTTGCATGCGCTGAACTAATATACTGAATATTTCATCAGTATGATCACTATGTGTACACTGTGGTATGATATAAAAGGCTGTAGAAAGTGTATAATCAGTTTCCATTTACAGTTAGCAAATTCAACAttccttctcttctctactcATATTGTTGTATATgttgcagaggaaaaaaaaaaggtttatcaGCTGAAATCGTGTGAACAGAAACATTTCTTTGTGAATAAGCAGACTGGATAAGCAGAAACAGTCTATTAATAGAATCGGGTCAGTGCACTTTCTTCAGTCTGGACTCGAAAGGTCAAGCCGAGCtgattgtttcatttaattGGTGAATAAACTCTATGCATGTTAATAAGTGACTTCagagaggtggtggtggtgggaaGGGGGAGTAATTATTCATCTTTAACAACTAATACTAAAGATATGCAGCTACAAGGACCACACAAGGAATGTAGCTAGGTAGGAAGGTTTGTAGATTACACAAAGGACACCAACAAGGGGAGTgaattatgtaaagaataaaacatgacgttctgttgtaggaaaatagtcaatgaTGAAATTTATTCTTCTCATATTATAGCACAACGTTTTTTctccctcttataccacagagacCAATTTGCcaattttgtattaattaaagaaccaCACATCGTACGTTTTACCCcgttatagttacttttaatactgtggaatgtccgtgatacacgttagttcctgttatcattccCTCAATTTCTCTTGTTagttaataaaccaaaaaaaattgcagcttgttactgaaaaaccacaTAATATACAACATCCTTAGACTTTCCCGTGGCTgaaaaattactgactgttacaaagcactgacactggagactccttccattaatgtataaaagtctccttacagaaaacttcaccatatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207332 lncRNA downstream 68316 3007004 ~ 3007662 (-) True G175213
TU207149 lncRNA downstream 309373 2760210 ~ 2766605 (-) True G175046
TU207148 lncRNA downstream 316152 2756832 ~ 2759826 (-) True G175045
TU207219 lncRNA downstream 345105 2729695 ~ 2730873 (-) True G175110
TU207218 lncRNA downstream 350225 2725094 ~ 2725753 (-) True G175109
TU207459 lncRNA upstream 76612 3205257 ~ 3205466 (-) True G175329
TU207460 lncRNA upstream 78106 3206751 ~ 3206971 (-) True G175330
TU207463 lncRNA upstream 81502 3210147 ~ 3210404 (-) True G175333
TU207646 lncRNA upstream 383346 3511991 ~ 3512232 (-) True G175483
TU207665 lncRNA upstream 421220 3549865 ~ 3581971 (-) True serf2
XM_026930760.2 mRNA downstream 52498 3020554 ~ 3023480 (-) True zgc:162592
XM_026930686.2 mRNA downstream 67362 3003935 ~ 3008616 (-) True LOC113536623
XM_034308733.1 mRNA downstream 78870 2976459 ~ 2997108 (-) True dhx38
XM_026930846.2 mRNA downstream 759843 2301621 ~ 2316135 (-) True hnf4b
XM_034308536.1 mRNA downstream 893593 2178548 ~ 2182385 (-) True marveld3
XM_026930257.2 mRNA upstream 7791 3136436 ~ 3141997 (-) True rpl13
XM_026930313.2 mRNA upstream 16137 3144782 ~ 3152111 (-) True gcshb
XM_034308871.1 mRNA upstream 26896 3155541 ~ 3164360 (-) True kars1
XM_026930654.2 mRNA upstream 27314 3155959 ~ 3167279 (-) False kars1
XM_034308872.1 mRNA upstream 27314 3155959 ~ 3167259 (-) False kars1
TU207151 other downstream 319453 2754355 ~ 2756525 (-) True G175048
TU207201 other downstream 472767 2602414 ~ 2603211 (-) True G175098
XR_003403705.1 other downstream 1428520 1647329 ~ 1647458 (-) True LOC113536795
TU206257 other downstream 2016744 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 2112900 961496 ~ 963078 (-) True G174207
XR_003403703.1 other upstream 10182 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 11425 3140070 ~ 3140161 (-) True LOC113536794
XR_003403706.2 other upstream 172494 3301139 ~ 3301270 (-) True LOC113536796
TU207666 other upstream 440696 3569341 ~ 3572262 (-) True G175497
XR_003403696.2 other upstream 726546 3855191 ~ 3909891 (-) False mical2a

Expression Profile