RNA id: XM_026930846.2


Basic Information

Item Value
RNA id XM_026930846.2
length 2878
RNA type mRNA
GC content 0.47
exon number 10
gene id hnf4b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2301621 ~ 2316135 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcttttttccttgcTTCTGGACAGAACAATTCCACAAGAAGTCAGAGACACTGAGGCAAGCAATCGGCGATCTCCGAAGAGAGGAGAAGCACGCCATGGTGGTGAAAGTGAATTGAGGGATCGGCAGGAAAGCCTCCTGAAAGATTGGTGGCTTTTATCCCTTGACCTTTAATCTCCTGTGTAAAGAAGTAAAAGAACTTAAGGTCATCCATCCAGTCTGACTTGGAATTACGGTACCATGAAGATCTCTGAAGGAGCGCTGGACTTGGGCACCACGGATTACGCGGTGGCCCTGGACCCGAGCTACACCATGCTGGAGTTTGACAGCCTCAGAGTTCTCCCAGTGGACACAGAGCCGCTGAAGCCCGAGCCGTCCCCTGTAGCCACAGCAGGGCTGCCCCAATCCGCCGTGATGCTGTGCTCCATCTGCGCAGATAAAGCCACTGGGAAACACTACGGTGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGGCGGAGTGTGCGCAAGAACCACGCCTACACATGCAGgttcaGTAGGCAGTGTGTGGTGGACAAGGACAAGAGGAATCAGTGTCGATACTGCAGACTACGGAAATGCTTCAGGGCTGGCATGAGGAAAGAAGCTGTACAGAACGAGCGAGACAGGATCAGCTGCCGTAGAGAATCTCAAGGGGTCGGGACTCTGACCATCAGCATCCTACTGAAAGCAGAAGAGAGCACACATCAGTTCTCCGGTCTGACTCCACCAATGACGGAAGTTATCACGAAGAAGATTGCTAGCCCACCCGACGTTTGCGAATCCATAAAACAGCAGCTCCTCCTCCTGGTGGAATGGGCGAAACGTATCCCAGAGTTCTGTGAGCTGCCAGTGGACGACAGGGTCAACTTGTTACGAGCTCACTCTGCTGAGCACCTCATCCTGGGCGTGGCTCGTCGTTCGCTACCCTACAACGATATAATCCTGCTAGGAAATGACTTCATCATCCCTGTGAATGGTCCAGAGCTGGAGATGTCCAAAGTGGCAGCACGTGTCTTAGAAGAGCTGGTCAGGCctctgagagagctggacataACGGACACAGAGTTCGCCTGTCTCAGAGCCATCGTCTTCTTCGCTCCAGACTGCCCAGGGCTGGAGTGTGCTCAGATGGTGCGCAGACTGCGTTTCCAGGCCCACGTGTTGCTGGACGAGGCGACATGCGAGCAGCGCGGCCGGTTTggggagctgctgctgctgctgcctccACTGCAGAGCACCGCCTGGCACATGGTGGAGCAGCTCCAGCTCGCCCGGCTGTTAGGAGAAGCCAGCGTGGACAGCCTGCTGCAGGAGATGCTGCTCGGAGAGTCAGCCACAGGCTCAAACCCAGAAGTGCTCGGTTTTAGCTCTCCTGCTGACCCGGTTCTGCCGCGGAATCTACAACCGGAACATGTGGCATTGCCAAACTTCACCTCCGTCATCCTCCCAGTACCGTCCTCTCTAGCTGGAGTTCCTCTGCTCGCCGTACAGCCAGGAGCTCAGctctacacacacgcaccagCTACAGAAATGACACTGGAGATAGACAGCTGTCTCACCAAGCCTGCAGTCCACACATGTCtctgagcagacagacagacacacacacacacacacacacacacacacacacacacacacacttcataacGCCGTCTTATCCAGTCctcctcacatacacactcacactgctaATGTTTGCTAATGTCCATGTATAATATGATGAATCTTAGTGCTTTACGTTCCCTCGTCATTTTTGATAAATACCtattaacacacatttttttctgatacCATTAATCATGTGAGAAACATAGTGTGAAGGAAACATGAACTGATTTTGTTTGTCACAAACAAAACTTGGAGGTTAAATAAATTATCACCAGCAGGGGGCGGTGAAATTTCTCAAAGCTCAGAGAAGACACAAAGTAGCCAACAACGTATTCAAATCTCATGCAGCTCATTGGAGGACGTTGTGACAACATCATTTTTTATCACTCttcttaaaatttcatttttgttagCTTTAGATAGATTGGAATAATTATCCGGTCGCATGTTACTGGATAAATGATGCCCCAAAAAATGTAGATTATATCGAttaatcatgtgagaaaatTTGCATGAAGGAAATTTGATCTGATTTCGCTTATCACATGGTGAAGAGTGtggagataaataaataaatcatcgCCAGCAGAGGGAGCTGATGGACCTGAACAGTTATGCCTACATCTTCTGAATTAGCAAACGAGCTGCATGTGACACCGTTGAGACGTAATTTAGACATAATTTGCGTAACTGTTAGGAAATcactgtggcataagaggaataaagcacgtCAGgatgcatgctgttataagaaattaacaacgacagggtggtatgatgaagcagagtcacttTACACCacagttgattaatttcccataacagcacatcccaaagtgttttcttcttcttataccacagcagtttaccaacaattacGCAAAATGCACAATTTATGTCACAGGTTTACGCATGTTTATCAGGTTTATACTTTACAGAGcacatttcttgttttttgccGTCATTTCTACCGTCACATGTTCAGTTTATAATCAGATCGGTTGCTTTATCGTCCTTAAATTGAATCCAAATCCAATAATTTTGTGCATGATGAGTTCTCTCTATTCCTGACTTTCTAATGTAGGGAATAGGGATATGGGAACACTTCACCTTTATATCGTCTGTATTTTTCTGTCAGGACACTTCAATAGgcataatactgtatatacacacatacatgcgcATACACCCGTactgtaattattacattttagttGTTGAATAAAGTTGAAAAGTCtgtttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206788 lncRNA downstream 24254 2277046 ~ 2277367 (-) True G174708
TU206754 lncRNA downstream 35874 2222613 ~ 2265747 (-) True G174680
TU206745 lncRNA downstream 94316 2174167 ~ 2207305 (-) True G174674
TU206736 lncRNA downstream 137758 2163636 ~ 2163863 (-) True G174665
TU206700 lncRNA downstream 227264 2074137 ~ 2074357 (-) True G174632
TU207031 lncRNA upstream 95537 2411672 ~ 2411967 (-) True G174929
TU207052 lncRNA upstream 122480 2438615 ~ 2438837 (-) True G174949
TU207073 lncRNA upstream 160500 2476635 ~ 2476835 (-) True G174970
TU207090 lncRNA upstream 174167 2490302 ~ 2490506 (-) True G174987
TU207133 lncRNA upstream 220495 2536630 ~ 2536840 (-) True G175030
XM_034308536.1 mRNA downstream 119236 2178548 ~ 2182385 (-) True marveld3
XM_034308537.1 mRNA downstream 119240 2178548 ~ 2182381 (-) False marveld3
XM_026930791.2 mRNA downstream 229348 2054212 ~ 2072273 (-) False LOC113536684
XM_026930792.2 mRNA downstream 229348 2054212 ~ 2072273 (-) True LOC113536684
XM_026930861.2 mRNA downstream 279390 2014722 ~ 2022231 (-) True LOC113536731
XM_034308733.1 mRNA upstream 660324 2976459 ~ 2997108 (-) True dhx38
XM_026930686.2 mRNA upstream 687800 3003935 ~ 3008616 (-) True LOC113536623
XM_026930760.2 mRNA upstream 704419 3020554 ~ 3023480 (-) True zgc:162592
XM_026930842.2 mRNA upstream 759843 3075978 ~ 3128645 (-) True cpne7
XM_026930257.2 mRNA upstream 820301 3136436 ~ 3141997 (-) True rpl13
XR_003403705.1 other downstream 654163 1647329 ~ 1647458 (-) True LOC113536795
TU206257 other downstream 1242387 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 1338543 961496 ~ 963078 (-) True G174207
TU205424 other downstream 2267489 30281 ~ 34132 (-) True calca
TU207201 other upstream 286279 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 438220 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 822692 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 823935 3140070 ~ 3140161 (-) True LOC113536794
XR_003403706.2 other upstream 985004 3301139 ~ 3301270 (-) True LOC113536796

Expression Profile