RNA id: XM_026930848.2


Basic Information

Item Value
RNA id XM_026930848.2
length 3062
RNA type mRNA
GC content 0.49
exon number 19
gene id arntl1b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3659384 ~ 3679257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGTAAGTAGGTTAGTGGCGCGCTGGTTATTCAAGGCGAATGAGGAAAAGTAGGTCAGTGTAAATATGTCCTGTCCTCTGCCGTCCATGTTACAGTGACTGTACATTCTGCCTTCTTCATGTTTTGTGCCTGGCTGCGTGTGTTGGGAGGTCAAAGGCGTCGCTGAGGACTGGAACCTGGGTAATTTTACGAACAAACGCTTCATGAGATGGTCTGAGAACGACGGTCCTCATGAATCTTTGTGATGATCTCATGGCAGACCAGAGAATGGACATCTCCTCTACGATGAATGAGTTCATGTCTCCCAGCTCCACGGAGCTCATCAGCAGTTCCATCAGCACGTCCTCCATGGACTACACCCGCAAGAGGAAAGGCAGCTCCACCGACTACCAGGACAGTATGGATATGGACAAGGACAAGCAAATTGGAAGGGATTGTATTGATCAGCAAGGCCGGATAAAGAATGCCAGGGAGGCTCACAGTCAGATTGAGAAGCGACGCAGGGACAAAATGAACAGCTTCATTGATGAGCTGGCTTCACTAGTGCCTACCTGCAATGCCATGTCCCGCAAACTGGACAAACTGACTGTATTGCGCATGGCCGTCCAGCACATGAAAACGTTACGAGGTGCTGCAAACCCTTACACCGAAGCTAACTACAAACCAGCCTTTCTGTCAGatgatgaactgaaacacttgATACTGAGGGCTGCTGACGGCTTTCTCTTTGTGGTCGGCTGCGATCGGGGAAAGATTCTTTTCGTTTCTGAGTCTGTGTACAAGATCCTGAACTACAGCCAAAATGACCTGATTGGCCAGAGcttgtttgattatttgcatcCTAAGGACATTGCCAAAGTCAAGGAGCAGCTGTCCTCGTCTGACACGGTGCCAAGGGAGCGACTCATCGATGCCAAAACCGGACTGCCGGTAAAAACGGACATCGCGCCAGGGCCATCCAGGCTGTGCTCTGGGGCCCGTCGCTCCTTCTTCTGCAGAATGAAAAGTAACAGACCTCTCATCAAAATGGAGGACAAGGACTTCGCCTCCACCTGCTCCAAAAAGAAAGCCGACCGCAAAAGCTTCTGCACCATCCACAGCACGGGCTATCTGAAGAGCTGGCCACCCATGCAGAAGGGCTTGGACGAGGACAACGAGCCCGATAACGAAGGCTGCAATCTGAGCTGCCTGGTGGCCATCGGCCGTCTCCACCCCCACATCGTCGCTCAGCCAATGAACGGAGACATCCGAGTCAAACCGACCGAGTACGTCTCACGCCACGCCATCGACGGCAAGTTCGTCTTTGTTGATCAGAGGGCCACTGCCATTCTCGCCTATCTACCCCAGGAGCTTCTGGGGACATCTTTCTATGAGTATTTTCATCAGGATGACATCGGACACCTCGCTGAATGCCACAGACAAGTGCTGCAGATGCGAGATAAAATCAACACTAACTGTTACAAGTTCAAGGTTAAAGATGGCTCCTTCATCACTCTGAGAAGTCGCTGGTTCAGTTTCATGAACCCTTGGACCAAGGAAGTCGAGTACATCGTCGCTACAAACACAGTCGTCTCggCTGGTACACGTGATGGAGCTGATCCCAGCTATCTCCAGCTCGCTGCCTCCCCCCAGAGCATGGACAGTGTCctcacagctgatgGTTCTGGGAAACGGGCTCTGCAGACAGTGCCTGGCATTCCGGGGGGCACGAGAGCCGGAGCAGGCAAGATCGGCCGCATGATAGCAGACGAGGTGATGGAGATCCAGAGGATAAGAGGCTCGTCACCCTCTAGCTGTGGCTCGAGCCCGCTGAACATCACCAACAGCACACCTCCTCCAGACACATCTTCTCCTGGGGGCAAGAAGATTCAGAATGGTGGAACTCCAGACATTCCTTCGGCGGGGATGGTGTCAGGCCAGGACTCCATAGGATACCCTTACTCTAACAACTCACTTTTAAGTGATAACTCTCACATCAGCATCGGGGACATCATGGACGAACCCGGCTCCAGCAGCCCCAGTAACGACGAGGCGGCCATGGCTGTCATCATGAGTCTTCTGGAGGCTGACGCAGGACTCGGAGGCCCTGTGGACTTCAGTGATCTGCCATGGCCTCTGTGAGAGGAGAGTATCGCTCTCAGGTGAGGGATTGGGACACAACCGAGGGAGCACAGCTCTCCTTCTTCAGTGTGTCCATCATCAGGCCCAGGTTTTTCCATAAAGTTTcacagactaatgataaggaaagTGTTACTAGCGTACAGTCATAATCATTATTCTGACGAACTTTTCAGAAACACTTCCCAGCAACACATCATCTTTCAGGAATTTTCTCAGTATACAGAGTGGAACACTGGAATCATCCACTTTTGTCTACATGGCACAACCTTTGTTGTATTATTTGGCACACTTACATGCAGAAATCTCTAACATACATTCACCCACCACTTTTAACaggaacaccagtacacctgtcaatcatgtgtcagcagcgcagtgtataaaatcatgcaggtgaagagcttcagttaatgttcacgtcattttcagacattttcagaacggggaaaaatgtgatcacagTGACTTTGACCCTGGCATGATGCTTGGTGCCGGATGGGtttttcacagaatggtgtgaaaaaacaaacatctacTGAGCAACACTTCTGCGcatggaaacaccttgttgatgattgaggtcagaggagaatggccagactggttcaagatGACAGGAAGATTACAGTAACTGAAAttagcactctttacaaccgtggtgagcagaaaagcatctcagaacattaAAACCTTGATGCAGCTGGGGTACagcaacagaagaccacatcttctggtcttttttttttattcttggctgaatgtatctgcatgattttatgcattctgCTGCTGCTTCATGATTGGCTAAacagataattgcatgaatgagcatggGTATAGGTGtacctattaaagtgaccagtggGTGTATGAGGTTTTTCACaaaattatgtatgtatgtatgtatgtatgtatgtatgtaagtatgtgtATTGTTTGAG

Function

GO:

id name namespace
GO:1901342 regulation of vasculature development biological_process
GO:0009648 photoperiodism biological_process
GO:0007623 circadian rhythm biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K02296 ARNTL, BMAL1, CYC; aryl hydrocarbon receptor nuclear translocator-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207665 lncRNA downstream 77413 3549865 ~ 3581971 (-) True serf2
XR_003403695.2 lncRNA downstream 81411 3572658 ~ 3577973 (-) True LOC113536694
TU207646 lncRNA downstream 147152 3511991 ~ 3512232 (-) True G175483
TU207463 lncRNA downstream 448980 3210147 ~ 3210404 (-) True G175333
TU207460 lncRNA downstream 452413 3206751 ~ 3206971 (-) True G175330
TU207812 lncRNA upstream 113280 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA upstream 116422 3795679 ~ 3795925 (-) True G175611
TU207893 lncRNA upstream 243056 3922313 ~ 3922941 (-) True G175676
TU208008 lncRNA upstream 396887 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA upstream 404715 4083972 ~ 4086193 (-) True G175775
XM_034308797.1 mRNA downstream 18424 3625423 ~ 3640960 (-) False znf710b
XM_026930685.2 mRNA downstream 18501 3625423 ~ 3640883 (-) False znf710b
XM_026930684.2 mRNA downstream 26480 3625423 ~ 3632904 (-) True znf710b
XM_034308417.1 mRNA downstream 48515 3606145 ~ 3610869 (-) True tmed3
XM_026930693.2 mRNA downstream 53389 3586377 ~ 3605995 (-) True frmd5
XM_026930382.2 mRNA upstream 56489 3735746 ~ 3737554 (-) True rassf10b
XM_034308947.1 mRNA upstream 62384 3741641 ~ 3812372 (-) True tead1b
XM_026930511.2 mRNA upstream 141979 3821236 ~ 3839338 (-) True parvab
XM_034308622.1 mRNA upstream 172590 3851847 ~ 3909893 (-) False mical2a
XM_026930830.2 mRNA upstream 172590 3851847 ~ 3909893 (-) True mical2a
TU207666 other downstream 87122 3569341 ~ 3572262 (-) True G175497
XR_003403706.2 other downstream 358114 3301139 ~ 3301270 (-) True LOC113536796
XR_003403704.2 other downstream 519223 3140070 ~ 3140161 (-) True LOC113536794
XR_003403703.1 other downstream 520477 3138827 ~ 3138907 (-) True LOC113536793
TU207151 other downstream 902859 2754355 ~ 2756525 (-) True G175048
XR_003403696.2 other upstream 175934 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other upstream 175934 3855191 ~ 3909889 (-) False mical2a
TU207939 other upstream 313469 3992726 ~ 3996433 (-) True bola3
XR_003403702.2 other upstream 369608 4048865 ~ 4049043 (-) True LOC113536792
XR_003403701.2 other upstream 373332 4052589 ~ 4052767 (-) True LOC113536791

Expression Profile