RNA id: XM_026930855.2


Basic Information

Item Value
RNA id XM_026930855.2
length 2536
RNA type mRNA
GC content 0.39
exon number 12
gene id adgrg3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4145852 ~ 4159196 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aataaaaaatggtaCCATGTGATATTTCTAGGTCAGTCTGACATGAACATTAAAGCTTATATACCATGTGATTTATCAAGCTCCTTCCGGTCTATCAGGAAACCACAGAGCATGAGAAGAGACCTTTGTTGCTTCAACAGTAGCGGCAAACGACAAATGAGATCTTTTTCGGACAAAATGGGGCTACATGATTTGCTTatcttttgtatatttttttccattacacTGACCATGACAGGAGCCGTTGAATGTCATCGGGTTCTTGAATTTTGTCAACGAAACGATCGCAACATCCCTTCGTGTCTTGAAAGCACAATGAGAAATTGTCAGACTCCACGAAACGTTCCTCCTCCTGACCCAGACTTTTATatgaaaaacatgcatttcTCAGAGGAGGCCAAACTGAAGACAAAGTATGGGCATGTAATCCGTATTCCCTCCGAAGCCATCGTGAAAAGCGGTGGGATGGAGAATGTTAGTGTGTCTCTGAAGGTATCAGTACTCAGCAACAGCATTTTCCAGGCACCTTCTGTTCGAGGATCTGTTCATGGGAGGGTCTTAGGCGTGTGGCTTGGTGAACAAGATCTCTACAACCTTTCTCAACCTGTTAAAATGCAATTTGTGAATACCAGTCAAaATGTGAGTGGGAAATGTGTCTTCTGGAAGCAGTCAAATAATGCAGGTCTCTGGAGCAGTGAAGGATGTAACACAAGCAGGAACAATATAGATTTTGTCTGCAGTTGCAATCACCTCAGTTTTTTTGCAGTGCTCATTAATCCCGGGAGTGTGCAAGACGCTGAAGATGTTCACCGTCTTgaatacattacatacattggGTCTTCTTTCTCTGTGCTATTCACAGCTATCGTCatcatattgtttttaattcaaaGGAAGAGGAAGTCAGAGCACTCTGTTGTCATTCATGTGCAGCTATCAGGCTCACTATTCCTGCTGCACCTCTTCTTTCTGGCCAGTACATTGGGGTCAGGAACAGAAAAGAAGCCAGTATGTCAGTGCCTTGGCCTCATCTTACACTGGGCCCTACTAGCCACTTTCACATGGACCGCTATTGAAGGTTTCCACTTGTACCTACTCCTTGTGCGGGTCTTCAACATCTACATCAGAAGATATTTGCTCAAACTAAGCTTAGTGGGCTGGGGATTTCCTATAATTACAGTGGTGATCTGTGGACTGGCTGGTTCATATGGCAAATACAGCTTAACAGAAAGTAACAACAATGAAACAAATCTCTGCTGGATAACCGATAAGACAGTGAGTTACATAACAGTGAACACTTATTTGGGGCTGGTGTTAGTCTTCAACACAGCGATCATGGTTCTGATTGTGGTGAAGATGTGGCAGTTAAAATTACGAGGTGTCCAGACTGGGAGCAGAATAAGAAGACTGTGGAAAGACTGGGCCACTATGCTGGGGCTCAGCGTGATTCTGGGACTCCCATGGGGACTGGCCTTTAGCACCTATGGACCCCTGAGTCTACCAGGGATTTACCTCTTTACCACCCTAAATGCTTTCCAAGGTGTTTTTGTATTCCTGTGGTTCTTATCAACCACATGCAAGTCAACTCATGATGAGAGGACTTCAACAAAGGATATCTCCATGAGTAATTTCAGCTCATGATAGTGGAACAAAGCACTAAACCACAATAGGTTGCATTGAGATGTATTAGATGAGGATTTGTTATGAGACATTGATGTACCTGAGAATGTCTAACTTTAATTCCAGTCTTTAATTCATAAATCAAAagtcagttaaaaaaacaaactgatgcTTTACAGTATTCTGCAAAAACTTTAATGTTTTATGGAAAGTTAAATGGAGATGGAAACTTAGATTTATGTCTTCTGCATAAGAGTGTCTGTAGAAAAGAGCAAATTTTAGATATCTTTAAGTGAACACAACACTGTCTATCTTCAAGTTAGGTCAACTGATGACTAATGGGCTAAAACCCAAGTGTCTATCTGTTTTCTGGAAATCAGCCAATCGCTTTACAATTTAGGACTTTGTAATGTGTAGTTTGCATGCCCATTTAAAGATGATCTAAACTGTGAAAATAAGATAAtcgttgtattattattattattattattattattattattattattattattactgttgttgttgttgcatatGAAGCAATCTATAGCCTCTTTTCCATAAGAGCATAGTCTGTTCATACagtttgagcagcagatcaacagtgaaaacCATTCATGGCTTCTTTGAGGGACATTTACCCTAAAAAATCAATAGGGTATAAATAGGGACATTATACCCTAGGAATATAAATCACTTAGACAAGTGAtatgtaaaaggattatatcgaatatgtgctgttatttttgtaatgttCACTGCATTTACACCCTCCACTGTTATAAGACTCGTATTTTCAAGTGATTTTacactaattttattttatttcccagTTAATAACAGGCAATAAAAGCCCTGCATAAATGAGACTCAATCGGTCTGTTTGTAATAAGTGTACCCTGCAGTAGTTTGAGCA

Function

GO: NA

KEGG:

id description
K08452 ADGRG3, GPR97; adhesion G-protein coupled receptor G3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208008 lncRNA downstream 7973 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA downstream 59659 4083972 ~ 4086193 (-) True G175775
TU207893 lncRNA downstream 222911 3922313 ~ 3922941 (-) True G175676
TU207812 lncRNA downstream 326322 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA downstream 349927 3795679 ~ 3795925 (-) True G175611
TU208115 lncRNA upstream 139781 4298977 ~ 4299868 (-) True G175854
TU208186 lncRNA upstream 340282 4499478 ~ 4504321 (-) False lto1
TU208239 lncRNA upstream 462932 4622128 ~ 4622987 (-) True G175963
TU208248 lncRNA upstream 471152 4630348 ~ 4632785 (-) True G175967
TU208311 lncRNA upstream 573186 4732382 ~ 4736416 (-) True G176015
XM_026930512.2 mRNA downstream 85009 4040364 ~ 4060843 (-) True ipo7
XM_034308411.1 mRNA downstream 127920 4007408 ~ 4017932 (-) False bco1l
XM_026930869.2 mRNA downstream 128055 4007408 ~ 4017797 (-) False bco1l
XM_034308410.1 mRNA downstream 128056 4007408 ~ 4017796 (-) False bco1l
XM_034308413.1 mRNA downstream 128056 4007408 ~ 4017796 (-) False bco1l
XM_026930740.2 mRNA upstream 13575 4172771 ~ 4181748 (-) True LOC113536655
XM_026930923.2 mRNA upstream 32932 4192128 ~ 4201910 (-) True LOC113536783
XM_026930361.2 mRNA upstream 109978 4269174 ~ 4279585 (-) True dhcr7
XM_026930851.2 mRNA upstream 339750 4498946 ~ 4504329 (-) True lto1
XM_026930795.2 mRNA upstream 350224 4509420 ~ 4512199 (-) True fgf19
XR_003403708.1 other downstream 45426 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 46001 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 49082 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 50590 4095207 ~ 4095262 (-) True LOC113536799
XR_003403701.2 other downstream 93085 4052589 ~ 4052767 (-) True LOC113536791
TU208693 other upstream 920621 5079817 ~ 5080895 (-) True G176307
TU208689 other upstream 980414 5139610 ~ 5190522 (-) False trip4
TU208736 other upstream 1032768 5191964 ~ 5196818 (-) False trip4
trnai-uau_1 other upstream 1131306 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 1154966 5314162 ~ 5314254 (-) True trnai-uau_2

Expression Profile