RNA id: XM_034308411.1


Basic Information

Item Value
RNA id XM_034308411.1
length 1860
RNA type mRNA
GC content 0.43
exon number 12
gene id bco1l
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4007408 ~ 4017932 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTTGTGGTTAATCATGTTCTGCATATCTTGCAGGTTATTTGAACAACAAACCTCTGTAGTATCAGCCCACATCATGCAGGCGATCTTCTGCAGAAATGGCACAGAGACACCGGAACCGGTCAAAGCAGAGGTGTCAGGTGCAATCCCACCGTGGCTTCAGGGGACACTTCTACGCAATGGGCCTGGACTTTTCTCCATTGGGAATATGTCGTATAATCACTGGTTTGATGGAATGTCTCTTATTCACAGTTTCACTTTTAAGCAAGGTGATGTATATTACAGAAGCAAATTCCTCAGGAGTGACACTTACATGAAAAACATTACTGCCAACAGGATTGTGGTGTCAGAATTTGGGACAATGGCCTACCCCGATCCCTGCAAGAATATATTCTCAAAAGCCTTCAGCTACATGCTCAGTGTCATTCCAGATTTCACAGACAATAACATTGTGAATATAATACGATATGGAGATGATTACTACACATCATCGGAAATAAACTACATCAACCAAATCAACCCAGTGACTCTTGACACTATGGGAAGAGTCAATTATAGAAACCATATTGCCTTGAACCTGGCAACAGCACACCCTCACTATGATGATGAGGGAAATACCTATAACATGGGCACTGCTATCATGGCACTGAGCGGACCCAGATATGTCATCTTCAAGGTGCCTGCTGCTACATCAGATACAAAGGACAGCAGAAaaaaaaatcttgCACTGAAGAATCTGCAACAGATTTGTTCCATTCCTTTCCGCTCAAAGCTCCACCCAAGCTACTTCCACAGTTTCGGGATGACAGATAATTACATTATCTTCGTTGAGCAGCCCTTAAAGCTGGACATTATCCGACTGGCCACAGCTTACTTCAGAGGAGTCTCCTGGGGCAAGTGCCTCAGTTTTGACAAAGATGATGTTACTCTGTTCCACATAATCGACAGGAAGACAGGGCTTGTGCTGAACACTAAGTTCTATGGGGATGCGTTTGTGGTTTTCCATCACATCAATGCCTATGAGGAGGACGGCCATGTAGTGTTTGACCTGATCACATATAAAGACAGCAGTGTCTATGACCTTTTCTACATAGACTACATGAAGCAGGACACGCAGAAATTCACTGAGATGAGTAAGGATTTTTCACCACCAGTCTGTCAGCGATTCGTCATCCCTGTCAATGCTGACCTCAAGGAAAATCCATTGGGCAAGAATCTTGTGAGGCTAGAGGGCACATCAGCTACAGCAGTCTTCCAGAAAGACGGTTCCTTGTACTGTACTCCAGAAACACTGTTTCATGGTTTAGAGTTACCTGGAATCAATTACCAATACAACAGAAAGAAGTACAGATATTTCTATGGCTCTATGATGGAGTGGTCACCACAAGCAAATAAGATCGCAAAAGTAGACACGAATACCAAAACACACCTAGAATGGATAGAAGAGGATTGCTACCCATCTGAACCAAAGTTTGTGGCATCACCAGGTGCTGTGGATGAGGATGACGGTGTTATCTTGTCATCTGTGGTCTCAGTGAATCCCAAAAAGTCACCCTTCATGTTGGTGCTGGACGCGAAGACCTTCAAGGAGATCGCTCGTGCCTCAGTTAACACAGCTGTTCACCTGGACCTGCATGGAATTTTCATCCCACAGGAATCTGAAccgaaataaaatcaaataatatttctggggaaaaaatgctgCTTACTCTATCAGCCTGCGGCATAGATGCCAAAGATCACAGATCACAGCTTTGTTTTGCACAAGAAACACATGGTATTAAATCCTACATGTGGCTTTTGATAAACATTTACTTTAACATTGTAATATATGcctgtaagtaaaaaaaaatttcaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207893 lncRNA downstream 84467 3922313 ~ 3922941 (-) True G175676
TU207812 lncRNA downstream 187878 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA downstream 211483 3795679 ~ 3795925 (-) True G175611
TU207665 lncRNA downstream 425437 3549865 ~ 3581971 (-) True serf2
TU208008 lncRNA upstream 58212 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA upstream 66040 4083972 ~ 4086193 (-) True G175775
TU208115 lncRNA upstream 281045 4298977 ~ 4299868 (-) True G175854
TU208186 lncRNA upstream 481546 4499478 ~ 4504321 (-) False lto1
TU208239 lncRNA upstream 604196 4622128 ~ 4622987 (-) True G175963
XM_026930790.2 mRNA downstream 2332 3997063 ~ 4005076 (-) False bco1
XM_034308983.1 mRNA downstream 3889 3997063 ~ 4003519 (-) True bco1
XM_034308466.1 mRNA downstream 10955 3992982 ~ 3996453 (-) False bola3
XM_034308467.1 mRNA downstream 10955 3992982 ~ 3996453 (-) False bola3
XM_026930724.2 mRNA downstream 17812 3962830 ~ 3989596 (-) True vat1l
XM_026930512.2 mRNA upstream 22432 4040364 ~ 4060843 (-) True ipo7
XM_026930855.2 mRNA upstream 127920 4145852 ~ 4159196 (-) True adgrg3
XM_026930740.2 mRNA upstream 154839 4172771 ~ 4181748 (-) True LOC113536655
XM_026930923.2 mRNA upstream 174196 4192128 ~ 4201910 (-) True LOC113536783
XM_026930361.2 mRNA upstream 251242 4269174 ~ 4279585 (-) True dhcr7
TU207939 other downstream 10975 3992726 ~ 3996433 (-) True bola3
XR_003403696.2 other downstream 97517 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other downstream 97519 3855191 ~ 3909889 (-) False mical2a
TU207666 other downstream 435146 3569341 ~ 3572262 (-) True G175497
XR_003403706.2 other downstream 706138 3301139 ~ 3301270 (-) True LOC113536796
XR_003403702.2 other upstream 30933 4048865 ~ 4049043 (-) True LOC113536792
XR_003403701.2 other upstream 34657 4052589 ~ 4052767 (-) True LOC113536791
XR_003403709.1 other upstream 77275 4095207 ~ 4095262 (-) True LOC113536799
XR_003403699.1 other upstream 78782 4096714 ~ 4096770 (-) True LOC113536789
XR_003403707.1 other upstream 81863 4099795 ~ 4099851 (-) True LOC113536797

Expression Profile