RNA id: XM_026930896.2


Basic Information

Item Value
RNA id XM_026930896.2
length 2033
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC113536758
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10580693 ~ 10592964 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgctTTAAGCTTCTacagtgcatcatgggaaagGTCGGGCTTCTGCTCTCGCTGGCTTTTATCCTCACCTCAGcctcagtgtgtgtgtgtgagctgatgtGTAGACCGGGTCACAGTGGACCAACCTATGAGTCTCTGCAGGAAGTATTCGACAGGAAGCCATTCAGACCGGCTGTGAACCTGAGTAACCCCACCATTGCCAACATCTCCTTCACCCTGTATGCTGTGCTTGGAGTGAATGAGAAGACTCAGATCCTCACCACGTTCCTCTGGCTGCGGTTGTACTGGTTTCACGAGTTCCTGATCTGGGACCCTGAGGCGTGTGATGGGATCAGTAAGATCTCACTTCCTGTAAGCAACCTCTGGTCACCTGACATCATCGTCTATGAGTTtgtggaTGATGACGTGTCTCAGGCATGTCCATATGTGTATGTTAACCACACGGGTCACATTCGCTATGACCGGATGCTCAGACTCGTCACAGCATGTAATCTGCAGATCTTCAGTTTCCCGTTTGACGTTCAGAACTGCACCTTCACCTTTGGCTCCTACATGCACACAATTCGGGATGTGAGGGTGAAGCCTGCTCTCCCCTTTGATCAGATGTCAGGGAACTCAAAGCGTTACCTGGAGGCCAGCGGGGAGTGGGAGCTGGTGGTGATTTTGGGAGAAGCGGGAATTCTCAAGTTCGGCATAGACGAGTGGGACATCATCACCTTCTgggtggtgatAAAGCGTCGGCCAATCCTGTATGTGGTGAATTTGCTCATCCCAAGCTCCTTCCTCATGGTCATTGACATTCTGTCCTTCTATTTGCCGCCTCACAGTGTTGACCGCGCCTCATTTAAGATGACGCTGATCCTCGGTTACACCGTTTTCCTGCTCATCATGAACGACCTGCTGCCGAGCACGGCCAACGGCACACCAATCATCGGAatttatttctctgtgtgtttggctATGATGGTCATCAGTCTGCTGGAGACTGTCATCATCACTAACGTTCTTCATCACAACTCCATGAAGTACCGCCCGGTTCCTCACTGGGTCCGAATGGTCGTGCTGAAATACATCGCTCGCTTCATCTGTTACAGTGATCcggacatcacacacacacagcggaaAATACTGGAACAAGGAGACATCTGGAGcacgcaacagacacacaccggcactatacaacacacacatgctaacgcagCAGGTGTGTCCCCCCTGTGTGTTCCCGAGCTGGTGGAgatcagtgagtgtgtgcgagCGATTCGCTCTCACCTCACCATGCTGCAGCGAGAAGAAGCTCTGCAGGATGAGTGGTGTCACGTTGGCTACGTCCTCGACTTCCTGCTATTCCGCGTCTACCTAATGCTCATCACCTGCTACGCCTTCGTCATCATCTTCATGTGGTGCATCTGgatgtaccacacacacacacacacacacacacagctcttatcTGTACTCTCACTGTTTAAACATGTTGTGATTTGGCTGAATGTCTCACTTGTGTCCTCacaatttgaataaatttaacTCTGTAAagtttaaagtgtttttattttcaataaaaatcCCATAAACATCTCTGCACATTTACCATTACTATTCTGATCCTGCCTGCACTATCCTGACCCCACCCCTACTACCCTGATTGTGCCCCGAGTACCCCAACCACACCGATTCCCCTGACCATACCCTTACTACCCTGACCACACCCCTACTTCCCTGGCCACACCCCTACTTCCCTGATCACACTACCTTGACCACTCCCCTACTACCCTGACCCCACCCCTACTACACTGACCCCGCCTCAATACCCCAGCCACACACCAACTCCCTCAACCACACCCTTTCTACCATGACCACACCCCTACTACTCTGACCCCTCCCCAGTACCCTGTCCACAACCCTACTACCTTGAGTAACTGGTGTATATTTGtggggatttttttgtttgtttgtttcctcatgttggtgtaaaatgtttatcataCCATACAAACACTTTGTTATGCAGCTACAGGATACACAAT

Function

GO: NA

KEGG:

id description
K04819 HTR3; 5-hydroxytryptamine receptor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212351 lncRNA downstream 1233 10578420 ~ 10579460 (-) True G179487
TU212349 lncRNA downstream 4661 10574536 ~ 10576032 (-) True G179485
TU212342 lncRNA downstream 17241 10561403 ~ 10563452 (-) True G179478
TU212327 lncRNA downstream 65492 10514696 ~ 10515201 (-) True G179469
TU212324 lncRNA downstream 68669 10511621 ~ 10512024 (-) True G179466
TU212392 lncRNA upstream 12547 10605511 ~ 10695119 (-) False LOC113536673
TU212640 lncRNA upstream 601473 11194437 ~ 11195673 (-) True G179727
TU212748 lncRNA upstream 816128 11409092 ~ 11420046 (-) True G179803
TU212763 lncRNA upstream 918135 11511099 ~ 11513673 (-) False LOC113536577
TU212764 lncRNA upstream 936659 11529623 ~ 11532033 (-) False LOC117598402
XM_034308456.1 mRNA downstream 25495 10544767 ~ 10555198 (-) False rnf13
XM_034308453.1 mRNA downstream 25495 10544767 ~ 10555198 (-) False rnf13
XM_034308454.1 mRNA downstream 25495 10544767 ~ 10555198 (-) False rnf13
XM_034308455.1 mRNA downstream 25495 10544767 ~ 10555198 (-) True rnf13
XM_026930826.2 mRNA downstream 50322 10527033 ~ 10530371 (-) True LOC113536710
XM_026930644.2 mRNA upstream 1708 10594672 ~ 10597238 (-) True LOC113536600
XM_034308842.1 mRNA upstream 12553 10605517 ~ 10616272 (-) False LOC113536673
XM_026930772.2 mRNA upstream 12553 10605517 ~ 10616272 (-) True LOC113536673
XM_026930895.2 mRNA upstream 30325 10623289 ~ 10635357 (-) True nmur1a
XM_026930349.2 mRNA upstream 46057 10639021 ~ 10644194 (-) True hykk.2
TU211855 other downstream 765468 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 1057363 9522416 ~ 9523330 (-) True G178942
trnae-uuc_3 other downstream 1689995 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 2332931 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 2333918 8246703 ~ 8246775 (-) True trnar-acg_7
TU212647 other upstream 651011 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 816128 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 903110 11496074 ~ 11503962 (-) False LOC117598430
TU213621 other upstream 2124397 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 2643439 13236403 ~ 13236475 (-) True trnam-cau_27

Expression Profile