RNA id: XM_026930924.2


Basic Information

Item Value
RNA id XM_026930924.2
length 972
RNA type mRNA
GC content 0.50
exon number 1
gene id LOC113536784
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3276863 ~ 3277834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCCAACTCCTCGGTTTGTTGTGCTTTTGAGCCCCACGTCTTACACCAATTCCTACCCCCTATACTTATTATAGAGTTCATTTTTGGCCTCACGGGGAACGTTCTGGCCCTCAGCATGTTCGCTTTCCACATGGAGAGCTGGAAGCCAAACTCCATCTACCTGGCACATCTGGCTGTGGCCGACTCAGTGGTGCTGTTCTGCCTGCTATTCAGAGCTGACTACTACCGCAGGGGCCAGGACTGGATCTTCGGAGATGCCTTCTGCCGCATCCTGCTCTTCCTCCTGGCAGCCAACAGGGCTGCTGGTATCTTCTTCCTCACTGCTGTGGCTGTGGACCGCTACCTGAAGATTGTGCACCCACTACATCGAATAAATCGGATGAAACTGAGCTACGCCATGTGGATCTCTGCAGGCCTATGGGCGATTATTATAGCTATGACAGGATACTTGCTGGGCTCGCCTCACTTTTTCAAGATCGGCAGCCGCATCCAGTGTGAGAGCTTCAACATATGCTTGGACAGCAGTCCACTTTCAATCTGGCACAACGCCTTCTATGTGATCCAGTTCTGCGTACCAGGCGCCATCATCATCTTCTGCACGGCCTGCATTACATGGCAGCTGAAAACCAAGACGATGGACTCTACAGGCAAGGTCAAGAGGGCCGTCCAGTTCATTTTCATCGTCGCCATGGTCTTCCTCATCTGCTTCTTTCCAAGCACTGCCTCACGGGTCGCTGTTTGGGTCCTGAAGTCCTGGTACCAAGAGTGTTCACACTTCAGTGAGGCAAATCTGGCGTTTTATACTTCAGTTTGCTTCACCTATTTCAATAGTGTGCTAAACCCTCTTGTTTACTACTTTTCCACTCCTGCATTCAGTGGTGTCATACAGAAACTTTTCAGGAGACTTACAGGGCAAAAAGAAGAGGCGCCTTCAGGGAACAGCAATGTGTCTACAGTAGCAAGCGAATAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08402 HCAR2_3, GPR109; hydroxycarboxylic acid receptor 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207463 lncRNA downstream 66459 3210147 ~ 3210404 (-) True G175333
TU207460 lncRNA downstream 69892 3206751 ~ 3206971 (-) True G175330
TU207459 lncRNA downstream 71397 3205257 ~ 3205466 (-) True G175329
TU207332 lncRNA downstream 269201 3007004 ~ 3007662 (-) True G175213
TU207149 lncRNA downstream 510258 2760210 ~ 2766605 (-) True G175046
TU207646 lncRNA upstream 234157 3511991 ~ 3512232 (-) True G175483
TU207665 lncRNA upstream 272031 3549865 ~ 3581971 (-) True serf2
XR_003403695.2 lncRNA upstream 294824 3572658 ~ 3577973 (-) True LOC113536694
TU207812 lncRNA upstream 514703 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA upstream 517845 3795679 ~ 3795925 (-) True G175611
XM_026930925.1 mRNA downstream 7448 3268444 ~ 3269415 (-) True LOC113536785
XM_034308885.1 mRNA downstream 23967 3234070 ~ 3252896 (-) True pkd1l2b
XM_026930806.2 mRNA downstream 57579 3169323 ~ 3219284 (-) False nfat5b
XM_026930672.2 mRNA upstream 109330 3387164 ~ 3469814 (-) False gli2b
XM_026930671.2 mRNA upstream 109330 3387164 ~ 3469814 (-) True gli2b
XM_026930486.2 mRNA upstream 277496 3555330 ~ 3561755 (-) True LOC113536512
XM_026930341.2 mRNA upstream 302141 3579975 ~ 3581987 (-) False serf2
XM_026930693.2 mRNA upstream 308543 3586377 ~ 3605995 (-) True frmd5
XR_003403704.2 other downstream 136702 3140070 ~ 3140161 (-) True LOC113536794
XR_003403703.1 other downstream 137956 3138827 ~ 3138907 (-) True LOC113536793
TU207151 other downstream 520338 2754355 ~ 2756525 (-) True G175048
TU207201 other downstream 673652 2602414 ~ 2603211 (-) True G175098
XR_003403705.1 other downstream 1629405 1647329 ~ 1647458 (-) True LOC113536795
XR_003403706.2 other upstream 23305 3301139 ~ 3301270 (-) True LOC113536796
TU207666 other upstream 291507 3569341 ~ 3572262 (-) True G175497
XR_003403696.2 other upstream 577357 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other upstream 577357 3855191 ~ 3909889 (-) False mical2a
TU207939 other upstream 714892 3992726 ~ 3996433 (-) True bola3

Expression Profile