RNA id: XM_034308418.1


Basic Information

Item Value
RNA id XM_034308418.1
length 3334
RNA type mRNA
GC content 0.56
exon number 25
gene id scube2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 605769 ~ 639000 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacacacgcctctcGGTGCGAGCGCGAGCTCATTTCCAGTGCGGTGTGAAGATGAGGCGGACGCTCGCGCTCCTCTCCAGAGCAGGATAAACGCATGTGGTCTGTGATTTTTAgctgatttttcattttgatcGCGTCTGAGACTGAAACTGAACACAATGAGGTCCGTCTGTCTCGCGCTGCGCTTCTgctggctgctgctgctgctgctgtgcaaCTGCGAGAGGAAAAGCGCTGCGCTCCCCCGGGACAccgATGTGGATCAGTGCTCTGACGGAAGCGATGCCTGTCACATTGATGCCATTTGTCAAAACACTCCGACGTCCTACAAGTGCACGTGCAAATCCGGCTTTAAAGGTGATGGGACGCATTGTGAagATATCGATGAATGTGATTCTGAATTCAACGGTGGCTGCGTGCACGAGTGTAACAACATCCCGGGAAATTACCGCTGCACGTGTTACGATGGATTTAATTTGGCTCACGATGGACACAACTGCCTCGACGTGGACGAGTGTCTTTTCAACAACGGCGGctgtcagcatgtgtgtgtcaaCACCATGGGGAGTTACGAGTGCCGCTGCAAGCACGGATTCTTCCTCAGTGACAATCAGCACACATGCATCCATCGCTCAGTGGAAGGTCTGAGCTGCATGAACAAAGAGCACGGCTGCGCCCACATCTGCAGAGAGACGCCCAAAGGCGGAGTTTCCTGCGAGTGCCGGCCGGGGTTCGAGCTCGCTAAGAACCAGCGCGGCTGCATCCTGACCTGTAACCACGGCAACGGGGGGTGTCAACACGTCTGCGAGGACACGGAGCACGGGCCGGTGTGCAGGTGTCACGCCAGATACACGCTTCAGACCGACGGGCGCTCATGTGTAGAAAGAGATGACGTGACCGCCAGCAGCTCTGACCACAACGCCACGTCTCTCGCCGAGGTGGACAAACGCGTCAAGCGGCGACTCCTGATGGaGACCTGTGCTGTAAATAATGGCGGATGTGACAGTATGTGTAAGGACACATCCACTGGCGTCCGCTGCAGCTGTCCTGTGGGTTTCACTCTCCAACCGGACGGCAAAAGCTGCAAAGacataGATGAGTGTGAGTTCCACAACGGAGGCTGTGACCACTTCTGTAGGAACACCATCGGCAGCTTCGAGTGTAGCTGTCGCAAAGGCTTCAAACTGCTGACGGATGAGCGCTCCTGCCAGGATATTGACGAGTGCTTCTTTGAGAGGACGTGTGACCAGACTTGTGTGAACTCCCCGGGAAGcttcgagtgtgtgtgtaataagggATACACACTCTACGGGCTTGCACACTGTGGAGacATTAATGAGTGCAGCGTGAATAACGGCGGCTGTGGACACGTCTGTGAAAACACCATGGGAGGATTTCAGTGTCACTGCAGAGCGGGATACAGACTGCACTGGAACAAGAAGGACTGCATCGAAGCTGATGGTTCTCCGGTTCTGATGGTTCCTGTGAGGCCGACGCTGAACTGCAGTAAACACGGAGGAGCTGAACACTGCTTCctcacctgtcagtctcaggtgAACATCAGCAGCGGCGCTGAAGATTCCTACACCGTGACCTGTGGCCTGCCGCTGCCGGGCTCGTCTGGAGGAGGACAGCGGGGCGACGGTGGGCCTCACTGCTCAGgtCTCAACTCTTTCTGCACTCACAGGATCAAAACCACAGCCACGTTTAAATGGGGTCAGGGGAAATGCAGTCTGAAACGAAGTCCAGAAAAACTCACCGAGAGCTTCAGCATGGCGCTGTCAGATAAGAAGGCCTTGGCTACTGAGAACGTGCAGTTCAGCTTCGTGAGGCTTCACTGTAACTCCTCGAGCCCCCGGCAGCGAAGTCGTCACGGCCGTAAAGCGGTGGAGGACGAGAGCTCGTCCATCACGGCCCTGTTTGAGCTCGATGTCAACCCAGAGGAGGTAACAGAGGGTTGTGATCTGGCGTGTGTGAAGCGGCGCTCAGAGAAGCGCCTGAAGAAGACCATCCGAACTCTCCGCAAGTCCATAAACAGAGAGCAGTTCCACCTGCACTTCGGCAGCTCGGAGTATGAACTCGCCAAGAAGGCGCGTGGCCCTGCAGACGGCCCTGAACCCTGCGGCCCCGGACAAGTGCTGCGGGACAGGAAGTGTGTGAACTGCGGCGTCGGGACGTACCACGACAGTGAGCAGGGGAGGTGTGTCCCCTGTCCTGCTGGAACATACCAAGACGAGGAAGGACAGTTACTGTGTGAGATGTGTCGGGCCGAAGGGCAGAGCGACCCGAGAACCACCGGAGCCCGGAGCGTCGCTGAGTGTGGAGGTCAGTGTTCTCCCGGACACTTCTCTCACGACGGCTTCCTGCCGTGTCGTCCGTGTGCCAGAGGATGGTACCAGCCGGAGCCAGGCCGCACTTCCTGCCTGCCGTGTGGAGGGAATCTGGTAACGAGGCACGAGGGCGCTGTGTCCTTCCAGGCCTGTGAGACGAAAGTGCAGTGTTCTCCTGGACATTACTATAACACCAGCACTCACCGCTGCATCCGCTGTCCACTCGGAACCTACCAGGTGGAATTCGGACAGAACTTCTGTGTGTCCTGTCCGGGAAACACCACCACGGACTTCGACGGATCCACCAGCGTCACTCAGTGCAaaaACAGGCGCTGTGGAGGAGAACTGGGTGAATACACCGGATTCATCGAGTCGCCCAACTACCCTGGCGATTATCCGGCTAACGTGGAGTGCACGTGGATCATCAATCCTCCACCCAAGCGCAGGATCCTCATCGTCGTCCCGGAGATTTTCCTCCCCATGGAGGACGAGTGCGGAGATTACTTAGTCATGCGCAAGAGCCCTCTACCAAACTCGGTGACGACGTACGAGACGTGTCAGACGTACGAGCGGCCGATCGCCTTCACCTCGCGCTCGAAGAAGCTGTGGATCCAGTTCAGGTCTAACGAGGGGAACAGCGGGAAAGGCTTCCAGGTTCCCTACGTGACGTACGACGAGGACTACCAGGAGCTAATCGAGGACATCGTCAGGGACGGGAGATTATACGCCTCGGAAAATCACCAGGAAATTTTAAAGGACAAGAAGCTCATGAAGTGTCTGTTTGACGTTCTCGCTCATCCGCAAAACTTCTTCAACTACACTGCTCAGGAGTCGAGAGAAATGTTCCCCAAATCCTTCATCCGGTTTCTGCGCTCGAAAGTTCTGCGGTTTTTACGTCCTTAGAAACAATCAGCAGAGAACTTTCTGTGGATTTAAGGAACGTGGCACTCGAATGGAAACATTGATCCTGGATAAATTTCCAAAATGTCCAAAAT

Function

GO:

id name namespace
GO:0042694 muscle cell fate specification biological_process
GO:0048747 muscle fiber development biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0008015 blood circulation biological_process
GO:0030141 secretory granule cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24706 SCUBE2; signal peptide, CUB and EGF-like domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206069 lncRNA downstream 36527 568413 ~ 569242 (-) True G174074
TU206042 lncRNA downstream 85796 506782 ~ 519973 (-) True G174054
TU205619 lncRNA downstream 149584 455864 ~ 456185 (-) True G173685
TU205566 lncRNA downstream 339231 263184 ~ 266538 (-) True G173639
TU205530 lncRNA downstream 418607 185451 ~ 187162 (-) True G173603
TU206125 lncRNA upstream 157394 796394 ~ 798832 (-) True G174127
TU206147 lncRNA upstream 184639 823639 ~ 823896 (-) True G174147
TU206150 lncRNA upstream 190936 829936 ~ 830269 (-) True G174150
TU206157 lncRNA upstream 223931 862931 ~ 953387 (-) True G174156
TU206208 lncRNA upstream 309473 948473 ~ 1001717 (-) True G174202
XM_034308477.1 mRNA downstream 3587 592803 ~ 602182 (-) True tmem9b
XM_034308877.1 mRNA downstream 20958 514156 ~ 584811 (-) True dennd2b
XM_026930625.2 mRNA downstream 94366 486645 ~ 511403 (-) True trim66
XM_026930391.2 mRNA downstream 124827 473831 ~ 480942 (-) True rerglb
XM_034308876.1 mRNA downstream 135586 448617 ~ 470183 (-) True stk33
XM_026930651.2 mRNA upstream 8059 647059 ~ 660384 (-) True slc7a6
XM_026930298.2 mRNA upstream 26577 665577 ~ 678091 (-) True si:dkey-181f22.4
XM_034308774.1 mRNA upstream 50168 689168 ~ 710231 (-) True adgrg1
XM_034308880.1 mRNA upstream 269291 908291 ~ 913167 (-) True nrn1lb
XM_026930497.2 mRNA upstream 293231 932231 ~ 935096 (-) True thap11
TU205424 other downstream 571637 30281 ~ 34132 (-) True calca
TU206214 other upstream 322496 961496 ~ 963078 (-) True G174207
TU206257 other upstream 418656 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1008329 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1963414 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2115355 2754355 ~ 2756525 (-) True G175048

Expression Profile