RNA id: XM_034308641.1


Basic Information

Item Value
RNA id XM_034308641.1
length 2743
RNA type mRNA
GC content 0.54
exon number 19
gene id caprin1a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1667626 ~ 1687076 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTTTGTAGTTGCCGGGCAGGCCGACGGTCTGGAACGTGTTTAGCTGGCTaatatccttaaaaaaaaaaaaaaataaaaaaacaagcaacatTCGAAAAATAAACgttcaaacacacagagaggttTGACATCTCTTTCAATATTGAAAGTAAAGaTGCCATCTGCAACCACTGGTGACTATGCTGTTCagtcctccagtccagagctggGCGCTGCTCCCGTATCAGCTCCCACCGAGGCCCTGAAGCAAGTGCTGAGCATCATCGAGAAGAAGGTCCGCAACATGGAGAAGAGAAAGTCCAAGCTGGAAGACTACAAGACACGGAAGACCAAAGGAGAGCGGCTAAATCAGGATCAGCTGgaAGCTTTGTCCAAAGCTCAGGAGGTGGCACACAACTTGGACTTTGCCCGGGAGATGCTGAAGAGCTTCTCGTCTTTAAATGTCGAGATCCAGAAGGCGGTGAAGAAGACGGCGCGTCGGGAGCAGCTGAAGCGCGAGGAGGCTGAGCAGCGGCGCCTGAAGGCTGTGCTGGAGGTGCAGTACGTTCTGGACCAGCTCGGCGAGGAGACCGTGAGGCAGGAGCTCAGGCAGGTGGAGCGAGGGAACGATGGGCCTCTGCTCACCGAAGCCGAGCTCACGGGGCTCGACGACTTCTACAAGCTGGTCGGCCCTGAGAGGGACCCCAACATCAGGCTGACCGATCAGTTTGAGGAGGCGTCCGTGCATTTGTGGGAGTTGATGGAAGGAAGAGACAAAGCTGTGGCAGGAACCACATACAAGGCCCTTAAGGAGACTTTGGACAAGATACTGCTCAGCGGCTACTTCGACCAGACGCAAACGCACCAGAAcggagtgtgtgaggaagaggaggaggaggtggagcagcagcagcagcagcctgctcctgctcctgccgAGTCAGTGGAGTGCGAGGAGCAGCCGGCGGAGCCAGAAGGGTCGGTCACTCAAGAATTCACGGAGCCCATCGAAGTGGAAGCAACAGAGTTTGTAAACCGAAAATTCATTCCAGAAGCCACTTATAACACCAGTACTGAAAAAGAGCAGGGAGGGGAATGGGCTGTGAGCTCTGAGATCGTAAGCTcccttcagcagcagcagcagcagccgcaGCCTCCTCAGCCTCAGCAGCCTCCTTCATCGATGAGCCCGGCTCTCGTGAGCTCGGAGACCCACTCGCTCGCCCCCGTACTCCCTCCCTCCTCGGCTGACCCGCTGGTCAGGAAGCAGGCTGTGCAGGACCTCATGGCACAGATGCAGGGCACCTACAACTTCATGCAGGACTCCATGCTGGAGTTTGACAGACAGCCTCTGGATCCCGCCATCGTATCTGCTCAGCCTATGAAGTCTGCACAGATGGTCTGTGCTCCAGCTCACACAGAAACCCGACTCCCTCAACACAGCACAGTCCCTGTACATCCAGAACCAACACAAGTTCCCATGGTGTCCCCTCCCACCGAAGCGTACACCTCTACGCCGCCGCTCTACCAGCCCCCTCACAGCACAGACCCTCGGCCTCAGCCCGACCCCATCGACCCCCTCCAGGTGTCCATGCCCCTGTCGTCTGAGCAGCCCCCTGCCTCGTCGTCCCAGCCCCAGGCCTTCCAGTCCGTCTCCAAACCCCTGCACAGTGGCATCAACGTTAACGCCGCACCATTCCAGTCCATGCAAACGGTGTTCAATCTGAATGCCCCAGTTCCTCCCTCGAATGAGCTGGAGTCTCCGAAGATGTCGAGTCAGTATCAGAGCACTTACACCCAGAACTTCAGCAGCCAGCCCACACACTCGGTGGAGCAGCAGGAGCTTCAGCAGGAACCTCTCCAGTCAGTTGTCGGAGCGTTCCACTCTCAAGACCAAGGGATTCCTTCCTCCGGGGGCCACCAGTCGATGAGCCAGCAGCCATCGGGTCAGGGCGCAGGGTTCGGACGCCAGCCGCAGTCTTTCTACAGCAGCCGAGCCGTGCCACGTGGAGGACCTCGCAACGCCAGAGGGGCCATGAACGGATACCGCGGACCATCCAACGGCTTCAGAGGTGGATATGACGGCTATCGCGCTCCTTTTCCCAACACTCCCAACACTGGTTATGGACAGACCCAGTTCAGCACTCCACGGGATTACTCGAGCAGCACCTATCAACGGGAAGGATATCAGCAGAGCTTCAAGAGAGGAGCTGCCCAGGGAGCTCGAGGTAGCTCTCGAGgacGAGGCGGACCGTACAAACCGAGCCGAGGGATGAGCATGATGGCTGCAGCACAGACTAGCTAACCCTAACACACTCCTCCCCATAACCCACTCACCAGACTCTACTCCATCTCCATCAGTCCATGTAGCAAGGTGTTtgggcgcacacacacacacacacacacacacacgagatgTGACGGTCCTGATAACGAAGCCATACCACTCCTAACTAATGCTGTACGTTGTAAAGCTTTCTCTCAATCAATCGCACGCTGTCGATAGCCTTAATTCTGTAAAGCAGGAAcgtttgtgcctttttttttaatttgttttcagtttaaaattGGACCAGGATAGACGACGATTCATATATAGTACACACAAACCTAGCCAAAAAATGTGAAGTATGAGCTGTACTGTattgtaatgttttgtttttttgttttgttttgtttgtttttgggtcACCTACTTCAATCTGCACCGTACTAATGATCACATGATGAGTGCTTCGTAGAATTAAATGTCTTTCAGTAGA

Function

GO: NA

KEGG:

id description
K18743 CAPRIN1, GPIAP1; caprin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206409 lncRNA downstream 31970 1635392 ~ 1635656 (-) True G174379
TU206382 lncRNA downstream 135412 1531816 ~ 1532214 (-) True G174352
TU206375 lncRNA downstream 197644 1465494 ~ 1469982 (-) True G174345
TU206358 lncRNA downstream 247881 1419369 ~ 1419745 (-) True G174329
TU206354 lncRNA downstream 253436 1409997 ~ 1414190 (-) True G174325
TU206422 lncRNA upstream 29761 1716837 ~ 1717245 (-) True G174390
TU206660 lncRNA upstream 169807 1856883 ~ 1904081 (-) False cd82a
TU206690 lncRNA upstream 304168 1991244 ~ 1991701 (-) True G174622
TU206685 lncRNA upstream 307025 1994101 ~ 1995636 (-) True G174617
TU206672 lncRNA upstream 327681 2014757 ~ 2015424 (-) False LOC113536731
XM_026930538.2 mRNA downstream 14148 1647120 ~ 1653478 (-) True rps13
XM_034308884.1 mRNA downstream 29364 1517346 ~ 1638262 (-) True plekha7b
XM_026930697.2 mRNA downstream 223048 1324713 ~ 1444578 (-) False sox6
XM_034308644.1 mRNA upstream 90265 1777341 ~ 1831151 (-) True ext2
XM_026930876.2 mRNA upstream 145250 1832326 ~ 1874531 (-) False tspan18a
XM_026930875.2 mRNA upstream 145250 1832326 ~ 1874531 (-) True tspan18a
XM_034308795.1 mRNA upstream 215955 1903031 ~ 1933222 (-) True cd82a
XM_034308796.1 mRNA upstream 215955 1903031 ~ 1928948 (-) False cd82a
XR_003403705.1 other downstream 20168 1647329 ~ 1647458 (-) True LOC113536795
TU206257 other downstream 608392 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 704548 961496 ~ 963078 (-) True G174207
TU205424 other downstream 1633494 30281 ~ 34132 (-) True calca
TU207201 other upstream 915338 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 1067279 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 1451751 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 1452994 3140070 ~ 3140161 (-) True LOC113536794
XR_003403706.2 other upstream 1614063 3301139 ~ 3301270 (-) True LOC113536796

Expression Profile