RNA id: XM_034308644.1


Basic Information

Item Value
RNA id XM_034308644.1
length 4985
RNA type mRNA
GC content 0.45
exon number 15
gene id ext2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1777341 ~ 1831151 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGTTGCTAATCCGGTGTCTACTGTATACCTGATGCCTGTGCAGCAGGAGGCGATACGTTCGGAAAAActggattttttcccctttatttccTGAAAGCTGTTCCATTTTCATGGAATAATCACCACTGACATGCTAATTATATAAACGAGGCAGTTTATACTGTCGTTTTGTctctaatttaattaaaatactatGAATTAATTTCTCTTCGACGTTGTTAAAGCCGCAGTGACGAGACGAAGCTAAGcgcTTTGTACTCAGGATGTGCGCGTCGGTGAAATACAGCTCTCGCGGTCCGGCTCTCATCCCTCGCATGAAGACCAAACACCGGATCTACTACATCACGCTGTTCTCCGTGGTGCTGCTGGGTTTAATCGCCACCGGAATGTTCCAGTTCTGGCCTCATTCCATCGAGTCTTCCGCGGAGTGGACTCTGGACCGCCGCAGCGTGCACGACGCTCCGCTGGTCAAACTGCCCGCGTCCAGCCCCATTCCCGAGAGAGGAGACCTGAGCTGCCGCATGCACACCTGCTTCGACGTCTACCGCTGTGGCTACAATCCCAAAAACCGCATCAAGgtgtacatCTACCCCCTGCAGAGGTTTGTGGACGAGGTGGACGTGCCCATCAGCAGTAGCGGTCTGTCCCGTGAGTATAACGAGCTGCTGAGCGCCGTCTCCGACAGCGACTTCTACACCGACGACGTCACTCGCGCGTGTCTTTTCATCCCGTCCATCGACGTGCTGAACCAGAACTCGCTGCGTATCCGCGAAACCGCTCAGGCTCTCGCCCTGTTGCCCAGatgGGATAAGGGGATGAATCACTTACTGTTCAACATGTTACCAGGAGGACCTCCGGACTACAACACGGCGCTGGACGTTCCCAGAGACAGAGCTTTGCTAGCTGGAGGCGGTTTCTCAACGTGGACCTACAGACAAGGCTACGATGTCAGCGTCCCCGTGTACAGCCCTCTGTCGGCTGAAGTCGATCTCCCCGAGAGACAGCCCGGCCCGAGGCGATACTTCATCCTGTCGTCTCAGACAGCCGTCCATCGCGAGTACCGCACAGAGCTGGAGAGGCTGAAGGAGGAGAACGGAGAGTCCATCCTCCTGCTGGACAAGTGCAGTAACCTCTCTCAGGGCGTGGCCTCGGCCCGGAAACGCTGCTCCAAGGGCCAGACGTACGACTACCCCCAGATCCTCCAGGAGTCGTCGTTCTGCGTGGTGTTACGCGGCGCTCGACTCGGCCAGGCCACTCTCAGCGACGTGCTGCAGGCAGGTTGTGTTCCCGTCATCATGGCCGACTCGTACATCCTGCCCTTCTCCGAGGTGCTGGACTGGAAAAGAGCATCAGTCGTCATTCCGGAGGAGAAACTTCCGGAGATGTACATGATTTTGAAAAGTATTTCTCACAGACAGGTGGAGGAGATGCAAAGACAGGCTCGCTGGTTCTGGGATGCGTACTTCAGCTCCATGAAGGCCATCGGATTGACCACGCTGCAGATCATCAACGATCGCATTTACCCCTACGCAGCACGCACGTACGAGCAGTGGAACAACCCTCCGCTCGTGAAGTGGTCCAGCGTGAACAGTCCGCTTTTCCTCCCGCTGATTCCTCCTCGGTCTCCAGGATTCACCGCCGTGGTTCTGACCTACGACCGGGTCGAGAGTCTCTTCAGGGTCATCACGGAGATCTCCAAAGTGCCGAGTCTCGCCAAGCTGCTGGTGGTCTGGAACAACCAGAACAAGAGTCCACCTGAAGAATCTCTTTGGCCCAAAATCGCCGTTCCTCTCAAAGTGGTGCGCACCAAAGAAAACAAACTCAGCAATCGCTTCTTTCCCTTCGATGAGATCGAGACGGAGGCGGTGCTGGCCATtgatgatgacatcatcatgctGACGTCTGACGAGCTGCAGTTTGGATACGAGGTGTGGCGGGAATTCCCAGACAGGCTGGTGGGATATCCCGGTCGACTCCATTTATGGGACCACGAGATGGGGAAGTGGAAGTACGAGTCGGAGTGGACCAACGAGGTGTCCATGGTGTTGACTGGAGCTGCGTTTTATCACAAGTACTTCAATTATCTGTACACGTACAAGATGCCGGGAGACATTAAGAACTGGGTAGACGCTCATATGAACTGTGAGGACATCGCCATGAACTTCCTGGTGGCCAACATCACGGGGAAAGCGCCTATAAAGGTGACGCCACGTAAGAAGTTCAAGTGCCCCGAGTGCACGGCGATAGACGGGCTGTCGCTGGACCAGACGCACATGGTGGAGAGgTCTGAGTGCATAAACAAATTCGCGTCCGTATTCGGCACCATGCCTCTGAAGGTCGTGGAACACCGTGCTGATCCTGTTTTATACAAGGATGACTTCCCGGAGAAGCTCAAGAGTTTTCCCAACATTGGAAGTTTATGACCGAGTCTCGCTCCTGTTCTTTACACTTTCGTCTTGTAAAAACCACGTCACAGATGCTCTAGGACTCATCGATGTTTAACTTTTTAAGATAAGAGCACGTTTCTTCTTGtttatgatgtgatgtgacgtGACAGAGGAAAACGTCCTGTTGCTGTATCTACACATGTTCTTTTATCGAGATGGATCTCCAGGAACTTGGAAGGAAGAACCGAACAACTGGAACGTCATGGAGCAGATTGTGTCTGTCGATAACACTGAAAATTAGGGTCCACTGAAAAACAATGTTTGACCTTGAGAAGCTGAAATCATggctttttatatgtttttatggAAAACGAGGATTGGATTGGAGAGTCTCAGAGCAGTATCAGTATATTAAACTTCCAGGAGCTCTCAGTGGTCTGGATTTACATTTCTCACTCAGAATTACTCACATTTTACTGTCTTTCactgtatttactgaataatacaTACTACTATTCAATACAAACTGAAAAAGGGTTTTAAGCGTTAAAAATTCAAAAAggagtttaaaaatatttacacttaTTTTAGTAAAGATTCATCGCTACCaaattacacattatacaccAAATTAGAGCTGCTAAGTAAGTAATTGGAAAAAGCGAATTTTCTTTATTACAAACCGGAACTTAAATCCCGTCACATTTTGGTtcctacactcttagaaacaGTGATTTTCTCAAGAGTTCTTTAAGGTTTAATTGGATaatttaagggttcttagcttcttaaataaaatatctgttgGTTCTGGGGAAACCCTTAAAGTTTCTGCGTAGAGCCATACAATAAATTGTTTCCtaacagaaatgttttcaggTACAACTGTTTTTAGAAGCTGGGAATTAAGCTtaaattatccaatgaacccttaaagaacccttgtaGAACCCTGTGTGTACCAAGAGTTAAATGTTTAATAGGTTCTAGGTATTacgaagaaaataaataaatagaaccCTATGGCAAAATGTTTAGGATGGGAAGAACCAttaattttctaatgaactcTTAGAGAACGCTTGAAGAACCCTTTGttctaagtgtgtgttttaacaaactccaaattattgctcattattttttctcattataatttcttcttaatatctagaacctggCAGGAGTCTGACATTTTAGCTATCATGGTTCTCTGTACATCCTTAGAAAATAAGGGTTCTTGAATGGAATTTGAATAAATAACGGTGCTTCGCTTTCAAAAAAAggattctttaaaatatttttgattggaaattattttatttgtagagtTCTACATGGAAACTTGAAGAGTTCCCCCAGAGAGATAACCAAATAACTATTAAAGTTTCAATCTAGAACTCTACAAGACAATATTATCTTAAGCTCTCCAAAGAAgctccaaattattgctcattcttttcttcttaatatctagaacTTGTCAGGAGTTTAACGTTTCGCTTTTGTGGAGGAAAAAGGGTTCTTGAAGCTTCTAGCACTTTATTATACGGGAAGAGAGAGAACCTTAAAGAATTCCCTCATGAGGAAAAGCTGAAGAATCATCCCTTAACGGTTCTAACGTTTCTGTAGAGTGTAGTACATGTCCAGGTTTTACaggttttcaaaaataaaactatttttcccccaaaaaccttcaaaaaaaataaacgatAGTCAGAATTCTTTCCTGCAGAGGAAAATTTGAGCACTTTCCAGTCAAATGTTTAGAAATTCCTCAGAAATTGAAAAAAACATCTCAACAAACACTAAGAAACAGTGATGGTGCAATCCAAGACATATAAATACTGTCCTTGTTTTAATCAGGGGTAATGTTTGCgttgtgaaaaataaattgcGATACATTTGCGTAATTTATCTAACAATTAACCCTGTTTATAAAAGGATGTGTGGGTTTTAGGCGTGAGCTACGGAAGCGATTTGTACAGTAAacacagaggtgccaacatttacggTTAATCATAGCTCTGTCAGCGAATGGCTAATTACGTAACATTTCcggttactttatatttgactTGTTTCTATGGCAATACATGACgtggaaaatcttttttttttcgactAAATCAGCGGTCAGAACGCAAACGAATAAAATTCACCTGGCGAAAAGGCAGATTCacagaaggggaaaggacgctgGTGTGACCTGTGgggctttttttgttgttgttgttgcagttaCGTTTGCTACGTTCTGACTTTATGTAGGTTTAGCTTCGGTCTTGTGAGCGAATAGGAAACAAGTAGGCGGGGCCGCCGACTCTGATCTGTATAAAAATGGAGGAGATTCTAATTATTAAGCAGCGCTCACATCGTGCGATCTTTCCGTCACTTGTTTCCGTCATCGTCTAACAATATAACACCTGCTAAGATTTTCATGTTAGCCGTCAATGCTGGCTCCTCTGTAAATACCGCGGTCTTTAGTCAATAGTAGCATTTCACAGTTATTCTTGTAATATATCCGTCtgtgtgaaagtttttttttaattgttattattattttttttaaacagtaaatagAATAAATCACAAA

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0097374 sensory neuron axon guidance biological_process
GO:0050650 chondroitin sulfate proteoglycan biosynthetic process biological_process
GO:0042476 odontogenesis biological_process
GO:0051216 cartilage development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030516 regulation of axon extension biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0031227 intrinsic component of endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050509 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity molecular_function

KEGG:

id description
K02367 EXT2; glucuronyl/N-acetylglucosaminyl transferase EXT2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206422 lncRNA downstream 60096 1716837 ~ 1717245 (-) True G174390
TU206409 lncRNA downstream 141685 1635392 ~ 1635656 (-) True G174379
TU206382 lncRNA downstream 245127 1531816 ~ 1532214 (-) True G174352
TU206375 lncRNA downstream 307359 1465494 ~ 1469982 (-) True G174345
TU206358 lncRNA downstream 357596 1419369 ~ 1419745 (-) True G174329
TU206660 lncRNA upstream 25732 1856883 ~ 1904081 (-) False cd82a
TU206690 lncRNA upstream 160093 1991244 ~ 1991701 (-) True G174622
TU206685 lncRNA upstream 162950 1994101 ~ 1995636 (-) True G174617
TU206672 lncRNA upstream 183606 2014757 ~ 2015424 (-) False LOC113536731
TU206668 lncRNA upstream 184354 2015505 ~ 2016500 (-) False LOC113536731
XM_034308641.1 mRNA downstream 90265 1667626 ~ 1687076 (-) True caprin1a
XM_026930538.2 mRNA downstream 123863 1647120 ~ 1653478 (-) True rps13
XM_034308884.1 mRNA downstream 139079 1517346 ~ 1638262 (-) True plekha7b
XM_026930696.2 mRNA downstream 332763 1324713 ~ 1444578 (-) False sox6
XM_026930876.2 mRNA upstream 1175 1832326 ~ 1874531 (-) False tspan18a
XM_026930875.2 mRNA upstream 1175 1832326 ~ 1874531 (-) True tspan18a
XM_034308795.1 mRNA upstream 71880 1903031 ~ 1933222 (-) True cd82a
XM_034308796.1 mRNA upstream 71880 1903031 ~ 1928948 (-) False cd82a
XM_026930629.2 mRNA upstream 105675 1936826 ~ 1979679 (-) False tp53i11a
XR_003403705.1 other downstream 129883 1647329 ~ 1647458 (-) True LOC113536795
TU206257 other downstream 718107 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 814263 961496 ~ 963078 (-) True G174207
TU205424 other downstream 1743209 30281 ~ 34132 (-) True calca
TU207201 other upstream 771263 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 923204 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 1307676 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 1308919 3140070 ~ 3140161 (-) True LOC113536794
XR_003403706.2 other upstream 1469988 3301139 ~ 3301270 (-) True LOC113536796

Expression Profile