RNA id: XM_034308733.1


Basic Information

Item Value
RNA id XM_034308733.1
length 4580
RNA type mRNA
GC content 0.54
exon number 28
gene id dhx38
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2976459 ~ 2997108 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTTTAGCTTTGTGTTTTCAGATCACTCTGCAGGATCACAGTCTCTCCGCTGAGATGGAGGACGACGCGTCCCTGCACAGGTTAGAGGGCAGCGGCCCGGGCTCGCAGGTCGGAGGACTGATAGTGAAGAAGAAAAACGCTTCGGCGGAGCAGCATGTGTTCCGAGCGCCGGCCCCTCGCACCTCTCTGCTCGGCCTGGATCTACTCGCCGCTCAGAAGCGCAAAGAGCGGGAAGGGAAGGAGCAGCTGAACTCGGACCTCGATGACCGAACAGTGAAAAAATCCAAGGTGTCGTCCTACAGGGACTGGGAGGAGAGCAGAAGCGACTCCGGGTCTGATGAGGACGATGAGGGTGGAGACAGGAGGAACGAGAAGAAGGAGAGCAGGCGTTACCGCACCTCAGGGGCAGAAACGCCCTCAAACCCCGGCGGCGTTAGTGAAGAATTCCGCAGGAAACATcagcagagggagagagaccgCCGAGAGCACGGAGTTTACGCATCGTCTAaagaggacagagacagagacagaaaccgagagagagagagagacagaaaccgagagagagacagagagcggaAAAGTGATCGAGATGACCGGGAGCGCAGCCGGGGGTCCAGCAGCAGCCGCTCGGAGCACTTGGACAGCAGCGTGAGGAGCGAGCGCTCGCAGAGGGATGGCTGGTCTGAGCGCATCAGCCGCGGGAGTCGCAGGGACGAACCTCAAACTCCCCGCAGTCGGCCCAGAGATGCTCCAACACCGTCTGCCTCCAGTTGGGATGAAGATGACAGTGGCTACGCTAGCTCGCGCCGGTCCCACTGGGAGAGCCCCTCTCCGGCCCCCTCACACCGCGAGACTGATCGCTCGGAGCGCAGCTCTCGCTCAGGCCGAGACAGCGAGAGGAGAGACAAGTCAGTGAGAGCTCGTTATCCGGAGGACACGCCTCTGCCCACGCCATCATACAAATACAACGAGTGGGCCAATGACAGGAGGCACCTGGGCTCCACACCTCGTCTGTCCAGAGGGAAAGGTAAAAAGGAGGACGGAGAGGACGGCATCAGTTTTGATAACGAGACTGAGAAGGAGCAGTGGGAGGAAGACCAGAGGCAAGCAGACAGAGACTGGTACATGATGGACGAGGGCTATGACGAATTCCACAACCCTCTGACCTCGAGCTCGGACGAGTATGTGAAGAAGAGAGAGCAGATTTTGCAGAAGCAGACCCAGAAACGCATTTCTGCACAGAAACGGCAGATCAATGAGGACAACGAACGCTGGGAGACGAACCGCATGTTGACCAGTGGTGTGGTGCAGCGCTTGGAAGTGGACGAGGACTTTGAAGAAGACAACGCAGCAAGGGTCCACCTGCTCGTCCACAACCTTGTCCCTCCTTTCCTAGATGGCAGAATTGTCTTCACCAAGCAGCCCGAGCCGGTTATTCCGGTGAAAGATCCCACTTCCGACATGGCCATCATCTCACGCAAAGGCAGCCAGCTGGTGCGCAAAcacagagagcagaaggagCGCAAGAAGGCGCAGCACAAACACTGGGAGCTCGCCGGGACCAAACTGGGAGACATCATGGGCATCAAGAAAGAGGAAGACAGCTCTGACGCTAAGCCTGTCGGAGAGGACGGGACTGTGGACTACAAGACGGAGCAGAAGTTTGCTGAACACATGAAGGAGAAGACTGAAGCCAGCAGCGAGTTTGCTAAGAGAAAGACTCTCCTGGAGCAGAGACAGTATCTTCCCATCTTCGCCGTTCGCCAGCAGCTGCTCAACATCATCAGAGACAACAGTATTGTGATCGTGGTGGGTGAGACGGGCAGCGGGAAGACCACGCAGCTCACACAGTACCTACACGAAGACGGCTACACCAGCTACGGCATGGTGGGATGCACGCAGCCGCGCAGGGTGGCAGCCATGAGCGTGGCCAAGAGAGTGAGCGAGGAGATGAGCAGCAACCTGGGAGAGGAGGTCGGGTATGCCATCCGCTTTGAGGACTGCACATCGGAGAAGACGATAATTAAGTACATGACTGACGGGATCCTGCTGCGAGAGTCTCTGCGTGAGTCTGATCTGGACCACTACAGCGCCGTCATCATGGACGAAGCGCACGAACGCTCGCTCAACACGGACGTGCTGTTCGGCCTGCTCCGAGAGGTGGTTTCCAGACGCTCCGATTTGAAGCTCATTGTCACGTCAGCCACCATGGACTCGGACAAATTTGCAGCATTCTTCGGAAACGTTCCCATCTTCCACATTCCCGGAAGGACGTTCCCTGTGGACATCCTGTTCAGTAAGactccTCAGGAGGATTACGTGGAAGCTGCGGTGAAGCAGGCCTTGCAGATCCACCTCAGCGGCTTGGTGGGAGATATTCTCATCTTTATGCCTGGCCAGGAGGACATCGAGGTGACGTCGGATCAGATTGTGGAGCGgctggaggagctggagaacGCTCCTGCACTGGCAGTCCTGCCCATCTACTCCCAGCTGCCTTCAGACCTGCAGGCCAAGATCTTCCAGAAGGCTCCAGACGGAGTGAGGAAGTGCATCGTGGCCACCAACATCGCAGAGACGTCTCTGACTGTAGACGGCATCATGTTTGTTGTGGATTCTGGATATTGCAAACTCAAGGTGTTCAACCCACGCATAGGTATGGACGCACTGCAGGTTTACCCCATCAGCCAGGCTAACGCTAACCAGCGGGGCCGGGCCGGGAGAACTGGGCCGGGCCAGTGTTACCgGCTGTACACTCAGAGCGCCTTCAAGAACGAGATGTTGACCACCACCATCCCGGAGATCCAGCGCACGAACCTGGCTAACGTGGTGCTGCTGCTGAAGTCTCTGGGCGTGCAGGACCTGCTGCTCTTCCACTTCATGGATCCTCCACCTGAAGACAACATGCTCAACTCCATGTACCAGCTGTGGATCCTCGGCGCTCTGGACAACACGGgtgctCTGACGCCGACAGGTCGCCTCATGGTGGAGTTTCCTTTAGATCCAGCTCTGTCCAAGATGCTGATCGTGTCCTGTGACATGGGCTGCAGCGCCGACATCCTCATCATCGTCTCCATGCTGTCAGTGCCGACCATCTTCTACAGGCCCAAGGGCCGAGAGGAGgagagcgaccaggtgagggaGAAGTTCGCTGTACCTGAGAGTGATCACCTGACCTACCTCAACGTCTACCTGCAGTGGAAGAACAACAACTATTCCAGCATCTGGTGCAACGAGCACTTCATCCACACCAAGGCCATGCGCAAGgtacGGGAGGTGCGAGCTCAGCTCAAGGACATCATGGTGCAGCAGAAGATGAACCTGATCTCCTGTGGCTCGGACTGGGACGTGATCAGGAAGTGCATCTGCGCCGCTTATTTCCACCAGGCGGCTAAGCTGAAGggcATAGGGGAGTACGTGAACGTGCGAACAGGGATGCCGTGTCACCTCCACCCCACCAGCTCTCTCTTCGGCATGGGCTACACCCCCGACTACATCACCTACCACGAGCTGGTCATGACCACCAAGgagtACATGCAGTGTGTGACGGCGGTGGATGGAGAGTGGCTGGCGGAGCTCGGCCCGATGTTCTACAGCATCAAACACGCAGGAAAGAGTCGACAGGAGAATCGGCGGAGAGCGAAGGAGGAGATCTCCAACATGGAGGAGGAGATGTCTCTGGCTGAACAGCAGCTGCGAGCGAGGAGAGAGGAGCAGGAGAAGAGGAACACACTGGGCAGCTCAAGGTCCATAAAGATCTGCACCCCGGGCAGGAGGGAGGACGTGCCCATGACTCCGAAGCGAACTCCTGCACGCTTCGGCCTTTAGATCACCCCGAGCTTCATACCACTCATGTTGTCCTGCTGTTTTCAGATCTGGTGAAGGTgtatttcccagcatgcaccagCAGTAGGAGCACTTGCATAAGAGAAGAGTAAGAGaaaggaggtggtggtggtggtgatggtggaggACTCATGGCTTGTAGTTTTACTGCAGATCTGGTTTTCATGTTACACACATTGCCTTTAATGTGTGAGTCTTTAGGTCCAGTGTATTACTGTCCATTTTTTACACTTATTTGCATACACATAAAATaggtctttatttttattgtgtattttcagTGTCAATATTTGCTTCAcacttatatttaattttttttcctgtttagcTTCATCTCAGTGCTGTATACCAACTCCGAGCTTTGTTTTTCCAGTTCAGTGTGGCAGAAATCCTCAAACTGAATATCATGAGTTTCATGTTATTTATGAGAAATAGCCACACAGTGTTGTAAATACACTgatcataaaacattttaaaacagtacAGTGGTCAGACATGGACGTTTTTATGATATAATGACTAGTTGACTATCATGttgtgttattaaaataaacaccagCCCATTTGGAAGAGACTGAATCTCTGGGAGGCTCCATTGTGACTCTGGGTGCCccagttattttattattgtttttattatttttagcagCTGTAAATATTGGATCTGCAgtaaatgctgaaaaactaTCAAGTCCTGTCAaccataataaatataaagaatttaAATGGT

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12815 DHX38, PRP16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207149 lncRNA downstream 209854 2760210 ~ 2766605 (-) True G175046
TU207148 lncRNA downstream 216633 2756832 ~ 2759826 (-) True G175045
TU207219 lncRNA downstream 245586 2729695 ~ 2730873 (-) True G175110
TU207218 lncRNA downstream 250706 2725094 ~ 2725753 (-) True G175109
TU207153 lncRNA downstream 268576 2613845 ~ 2707883 (-) True G175050
TU207332 lncRNA upstream 9896 3007004 ~ 3007662 (-) True G175213
TU207459 lncRNA upstream 208149 3205257 ~ 3205466 (-) True G175329
TU207460 lncRNA upstream 209643 3206751 ~ 3206971 (-) True G175330
TU207463 lncRNA upstream 213039 3210147 ~ 3210404 (-) True G175333
TU207646 lncRNA upstream 514883 3511991 ~ 3512232 (-) True G175483
XM_026930846.2 mRNA downstream 660324 2301621 ~ 2316135 (-) True hnf4b
XM_034308536.1 mRNA downstream 794074 2178548 ~ 2182385 (-) True marveld3
XM_034308537.1 mRNA downstream 794078 2178548 ~ 2182381 (-) False marveld3
XM_026930791.2 mRNA downstream 904186 2054212 ~ 2072273 (-) False LOC113536684
XM_026930792.2 mRNA downstream 904186 2054212 ~ 2072273 (-) True LOC113536684
XM_026930686.2 mRNA upstream 6827 3003935 ~ 3008616 (-) True LOC113536623
XM_026930760.2 mRNA upstream 23446 3020554 ~ 3023480 (-) True zgc:162592
XM_026930842.2 mRNA upstream 78870 3075978 ~ 3128645 (-) True cpne7
XM_026930257.2 mRNA upstream 139328 3136436 ~ 3141997 (-) True rpl13
XM_026930313.2 mRNA upstream 147674 3144782 ~ 3152111 (-) True gcshb
TU207151 other downstream 219934 2754355 ~ 2756525 (-) True G175048
TU207201 other downstream 373248 2602414 ~ 2603211 (-) True G175098
XR_003403705.1 other downstream 1329001 1647329 ~ 1647458 (-) True LOC113536795
TU206257 other downstream 1917225 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 2013381 961496 ~ 963078 (-) True G174207
XR_003403703.1 other upstream 141719 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 142962 3140070 ~ 3140161 (-) True LOC113536794
XR_003403706.2 other upstream 304031 3301139 ~ 3301270 (-) True LOC113536796
TU207666 other upstream 572233 3569341 ~ 3572262 (-) True G175497
XR_003403696.2 other upstream 858083 3855191 ~ 3909891 (-) False mical2a

Expression Profile