RNA id: XM_034308774.1


Basic Information

Item Value
RNA id XM_034308774.1
length 2620
RNA type mRNA
GC content 0.51
exon number 14
gene id adgrg1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 689168 ~ 710231 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcctccctcgGTGTTACCGAAGAGCTCGCGCGCCTCCCGGTTGGTGTGGGCAGCTCGCGCTCTGTGTAGTGACCCCGGTTTGTCTCACAGGAAAACCTCCACATCTCTGAATCTGGTGTGATAATTGCGGAGTCTCcgcgtgaaaaaaaaaaaaacgcgaCGCGTGAGCGCGAGACTTGCGTTGCGTGAAGAAGTGCGGTGCGTTTTAACCCGTGCGTCAGAAGAAGCGTGAAGAGCTCGCGCTGTGGACCTGCGTTTTCACCCATACGGATTTTATCCCACATTATTTCgctccggtgtgtgtgtgtgtgtgtgtgtgtttcaccagttttctgctttttaactaacgtggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtgaggaaGCGCGAGACCGTCGTTTCACTGGATTAAAGCTTCAGAAGTGCTATGATGAATCAGAGGATTGGAAACCTGCTGCTTGTCCTCATTATAAGTGTTTATGGTCATGCGGCAGGGGAGAACGACCGAGACTTTAAGATGTGTGGAACGTGGCTGCACAATGGAAGCTCACAAACCCTGGATATTGATTTAAAGCCCGGATGTTCAGGGATCAACATTTCAGCCAACGCCAGCACTCTGTCCATCCGTGGCTCAATAACGGCTAAGTGTAAGCGGTCTCAGCCTCTGCCTCTGGCAGCTTCTCGAGGTTCCTCCAGTTCCTTCTGTGTGTACTGGGAGCCGCTGCTGGACCAGCTGATGCTGGAGCTGAACGGGGAGAGCTTCTCACTCTGTAATGCTAGGGGACTACAGACCCAGTGCTGTACTGATCTCTCTCTTGGACGTCAGAGACCTTCCCAGCTGTATGGAATCAAGAACGGCAGAGTGCATGGGGACGTTCTGACCAGCAATGTCATGGCAGAGTACGAGTTTACTGGCCAGGAGATTAACTGCAAGGCTCAATTCTGCGATAAGGCAGCTCAGGAGTCCAGAGGAGCGAACATgttagAGGAGGCCGTCTTGAGGTCAGCGGAGGTCGGTCATGTGTATCTGCCGTGTGTTCAGAGCACCGTGATCGAGATGAAGGAAGATTTTGCAGGAAGTAACGTCACTCTGCTTGCTCCGAGGGGTGTACCACCAGAGAGGATCCCGGCAGTGCACTTACCCGCCTGCCTCAAAACTGCAAACAGAAAAGTATCCAAAGTGGTGTGTAGCTACTACAAGAACAGCACGTTTTTCCAGaaAAGTTCTCACAGGATTTTAGAAGACGTTGTTGGGATTACGGTGGAAAATGAGATCATCACAAACCTCCCAGAACCCATTAGAATCAAGTTTTATCACCCAGTAcatggtgatgtgtgtgtaaaatgcgTTTCCTGGGATACAAGAAAAGATAACGAGGTCGAGTGGAGGGAGACAGGTTGCATAACGCTTCAGCTCAGCGCAGTCGAGACGGAGTGCTGCTGTAATCACCTCACGTACTTCGCTATTCTTGTGGAATTGAACCCTACGAGAAGCGTGCGCCACCTGGAGGCTCTGACCATCATTACAGCGGTGTGCTGCGCCGTATCCATCGCCAGCTGTGCCATTCTCTTCATATCGCTCTGCagacagagGAAATCAAAGAACCATTCGAGTCTGGTGCACCGTGGTCTGGTCGTGGCTCTGTTCTTCCTGCTCGTGCTCTTCGTCCTCACCGGCACCGTGGCCAACACTGCGTCCGAGGGCGTGTGCCGCTTCGTCGGcggcctgctgcactacacgcTCCTCAGCGTCCTCTGCTGGATGGCCGTGGAAGTGATTCACACCTTCTGGATGATGTACATGGTGTTCAGTCCGAAACCAAATCCATGGATCTGGTGCCTGCTGGGATTCGGTGTTCCGGCTCTGCCGGTTATTATTCTGGGATCCATCGGAGACATTTATGGCCAGAGGGCGGTGAAGTCCAGTGATGATCTCACAACTCCGTATCGCATGTGCTGGATGACGGACTCTCCGGCGGCTCTGATGGCTCACTTCATCATCAACACGgggctgctggtggtggtggtgagcTCCGGCCTCGTCATGCTTTTCCTGGTGTTCAGGAAGATCCGTCACCGGGACGAGTGGAGGACGAACCGCGTGGCCTTCCTCAGCATCTGGGGTCTCAGCTGTCTGTTCGGTTCCACCTGGGTTCtcgctttcttttcttctgaagCCTCAGAAAccgtcctcttcctcttctgcaTCATTAACTCATTACAAGGATTTTTCCTCATGTTGCGGTTCTTCGCTCTGGAGCGGATGCAGAAGAATTCTCCGTCCAGTTCGGACTTCAGCAGCACCGGATCCACACGACAGCACATGCTACAACCTCCGGAGAAGAACTAGGAGTGACCTCCTAAAAAAGggactcttttaaaaaaaaaaaaaaaaaagctaagagTGTGTTTAGTAGTCATTTTAGAAACAGGTTTCAGAGACGggcatttataaaaaatttatatttcagcaTTAATCCCTGCTGGTCAGGTCTGTGGCTGTgcactgaagaaaaaacagaccaaaaaaaaaaaaagcttcatcaACATTAAGCTGAATATTCGACTGTATAAACTCCGTACATTTATTACGTGTTTTG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206069 lncRNA downstream 119926 568413 ~ 569242 (-) True G174074
TU206042 lncRNA downstream 169195 506782 ~ 519973 (-) True G174054
TU205619 lncRNA downstream 232983 455864 ~ 456185 (-) True G173685
TU205566 lncRNA downstream 422630 263184 ~ 266538 (-) True G173639
TU205530 lncRNA downstream 502006 185451 ~ 187162 (-) True G173603
TU206125 lncRNA upstream 86163 796394 ~ 798832 (-) True G174127
TU206147 lncRNA upstream 113408 823639 ~ 823896 (-) True G174147
TU206150 lncRNA upstream 119705 829936 ~ 830269 (-) True G174150
TU206157 lncRNA upstream 152700 862931 ~ 953387 (-) True G174156
TU206208 lncRNA upstream 238242 948473 ~ 1001717 (-) True G174202
XM_026930298.2 mRNA downstream 11077 665577 ~ 678091 (-) True si:dkey-181f22.4
XM_026930651.2 mRNA downstream 28784 647059 ~ 660384 (-) True slc7a6
XM_034308418.1 mRNA downstream 50168 605769 ~ 639000 (-) True scube2
XM_034308477.1 mRNA downstream 86986 592803 ~ 602182 (-) True tmem9b
XM_034308877.1 mRNA downstream 104357 514156 ~ 584811 (-) True dennd2b
XM_034308880.1 mRNA upstream 198060 908291 ~ 913167 (-) True nrn1lb
XM_026930497.2 mRNA upstream 222000 932231 ~ 935096 (-) True thap11
XM_034308882.1 mRNA upstream 241154 951385 ~ 952329 (-) True LOC117598426
XM_026930712.2 mRNA upstream 288828 999059 ~ 1002638 (-) True fbxl8
XM_026930545.2 mRNA upstream 420800 1131031 ~ 1137703 (-) True aph1b
TU205424 other downstream 655036 30281 ~ 34132 (-) True calca
TU206214 other upstream 251265 961496 ~ 963078 (-) True G174207
TU206257 other upstream 347425 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 937098 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1892183 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2044124 2754355 ~ 2756525 (-) True G175048

Expression Profile