RNA id: XM_034308875.1


Basic Information

Item Value
RNA id XM_034308875.1
length 1869
RNA type mRNA
GC content 0.46
exon number 6
gene id ric3a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 267730 ~ 272572 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTTGGTTTCAGGGATTCAGAGGATCACTTTGCTCTCTTGTCTCGTCCTCTCCGTGGCTCTGTTTTTGCCCAAACTGTTTTTATCTGCAGGGGAGGAGAAGCTGCTTCTTCACTCAGAGGGAGAAGATGATCAGTGGACACCTGAATCACTTTACACAACACGTCAGAACCCCGAGACCTTTTCCCACACGAAGACTCTTCGGAAATCCACACTCCTCGCTCAAGTCACTCCTATTTACGGCTTTGGAATCTTCCTCTACATCATCTACATATTCTATAAgCTTTCACAGAAAGACAGAGCTACAAAACAGCGATGCAGCTTCTCCATCATGACGcctgaacacacagcacaggaaATGTCTGAAGATGAGACGGCTCAGCTACAGACCAGAATAAAACAGAtggaaggacagagagagaggagaacatCAACATCTGTCCCAGATCCTGCAAGGTGTCGTAAGGACAGAAGTGGACGTGAGGAGAGAAAACTCCAGGACCTGACGAAGATCACACACATGCTGGTGGAGGGACGGCCGCTGGAAGACGTCACCCCTGAGGTGGAAGCTGAGGAAACCCCGTATTCTGCAGACTGGGAGGGTTATGCAGAAGAGACCTTTCCTCAGTATGAGGTGCCGCTGTGCAGACGTCGATATCCAAGTGTCATCCTGGAGGAGCCATACGGAGATGTTCCTACACCTGAGGAACTGGCTGAAAGAATGGAGAGagaagatgaggaggatgaaaagaatgaagaagagacagaagaagTGAAGGATGAGTGCAGTGAAGATGAAGGGATAAAGGGTGATGGTGATCTCAAACAGGCACTACTcgaaaaaggagaagaaacagATGATAATGAAGGTGATGCTGATGAAGAAGATTATAAAcaggatgaagaggaagaggaggaagttGGTGAACCTTGTCTGGCTCATAATTCTACTGATGAAGAGGAGACACCAGGAAATCAGAAGGAAGGAGAAACATCCAGCAGGAGAAAACAGATAACGTTCAGTAATCACAGGCACGTCTTCCACTATCCAAAAGGAGGCGCTGTTGGCTGCAGTTATGAAGAtgaggaggtggaggaagaCGCacctgaagatgatgatgatgatgatgatgatgatgatgtggtggAGGATAAgcaggatgaagatgatgatctaaaggagatggagatggagagggagGAGGACGACCCGCTGATGGAGGCTGAGCGTCTGGGCTTCAGCACTCAGTTCACATGTGATCCTGAAGAACAGGAAGTTGATCTGATCGACTTCCTTCTCACATATAAACCTGAAGCTGTGATTAAGTCCGACCAATCAGGAGCAGCTGAAGCTCCAGGGCTCAGGATGCGCTACAAGAACCAGAAAAAGGAAAACTGAGCTGATCAGCAACACCGTCCACAGGAAGTCCAGAGGAAATGCAGAGGAAATGCAGAGGAATTCCAGAGGAAATGCAGAGGAATTCCAGAGGAAATGCAGAGGAAATGCAGAGGAAATGCAGAGGAAATGCAGAGGAAATGCAGAGGAAATGCAGAGGAAATGCAGAGGAATTCCAGGCTCTGATAAGGATTTACTTTTACTctagatgtttaaaaaaactcagagtgttgtgtgtttttctccgtGTTTCTGACTCCAGTATCTAAAAAAGCATTAAGTtgtaatttataaatgtgaCTTTAGAAgttatgttgtttttgtttgtttgtttgtttgtttgttttgtcaagAGTTTTTCATTGGAATTATGATGGAAGGTGTGAGGTGGCagagatgcaagtgcaggtgaCTTTTACACAAAACAGGCAAACACGAGATCAAAAGTCCTGGTATCATCACAAGCAAGTCgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205566 lncRNA downstream 1192 263184 ~ 266538 (-) True G173639
TU205512 lncRNA downstream 52269 155542 ~ 215461 (-) True G173586
TU205530 lncRNA downstream 80568 185451 ~ 187162 (-) True G173603
TU205529 lncRNA downstream 81289 185451 ~ 186441 (-) False G173603
TU205528 lncRNA downstream 81916 184027 ~ 185814 (-) True G173602
TU205619 lncRNA upstream 183292 455864 ~ 456185 (-) True G173685
TU206042 lncRNA upstream 234210 506782 ~ 519973 (-) True G174054
TU206069 lncRNA upstream 295841 568413 ~ 569242 (-) True G174074
TU206125 lncRNA upstream 523822 796394 ~ 798832 (-) True G174127
TU206147 lncRNA upstream 551067 823639 ~ 823896 (-) True G174147
XM_026930344.2 mRNA downstream 171600 45726 ~ 96130 (-) True pde3b
XM_026930347.2 mRNA downstream 233564 30351 ~ 34166 (-) False calca
XM_026930689.2 mRNA upstream 26652 299224 ~ 335808 (-) True lmo1
XM_034308876.1 mRNA upstream 176045 448617 ~ 470183 (-) True stk33
XM_026930391.2 mRNA upstream 201259 473831 ~ 480942 (-) True rerglb
XM_026930625.2 mRNA upstream 214073 486645 ~ 511403 (-) True trim66
XM_034308877.1 mRNA upstream 241584 514156 ~ 584811 (-) True dennd2b
TU205424 other downstream 233598 30281 ~ 34132 (-) True calca
TU206214 other upstream 688924 961496 ~ 963078 (-) True G174207
TU206257 other upstream 785084 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1374757 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 2329842 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2481783 2754355 ~ 2756525 (-) True G175048

Expression Profile