RNA id: XM_034308876.1


Basic Information

Item Value
RNA id XM_034308876.1
length 2302
RNA type mRNA
GC content 0.47
exon number 15
gene id stk33
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 448617 ~ 470183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atggcTGACGGGATTCGCATCCAGACACAAACTAGCGTTCCGAActggaaCAGCAGCCGGTCTAGACCGAACCCGATCTGCTTTGTTTATAAGGATTTTACTTCAGCCTTCAGTTCAGGAGGAGATGGTAATCAACACGGCCTTCATGCAAATTGCAGCTCCTTGGTGAAGATCGATGTTTCTGGAGCTGGTGAGAAGATGGCCACGCAGTGGACCCGTGTGAACAGCGCAGAGAAGAAAGTGCCACACACTCGCCTGAAGGATGAGGCTGACATTCAGCAAATCTACTCCTTCGGGAGGAAACTAGGTCAAGGAAGCTTCGGGGTCGTCTGTGAAGCCACTCACCTGGAGACGCAGAAGAAGTGGGCGATTAAGAAGGTGAACAAAGAGAAGGCTGGGAGTTCAGGTGTGAAGCTGTTGGAGCGAGAGGTGAACATCCTGAAGCAGGTGAACCACAAGCACATCATCCACCTGGAGGAGGTGTTCGAGACGCCTGAGagaATGTACCTGGTTGTAGATCTGTGTGAAGGTGGAGAGCTGAAGAAGCTCTTACAGAAAAACAAGCGTTTCAGTGAGGAGGAGACcagacacatcatcagcagctTAGCCGAGGCCACTGTCTATCTTCACAAACGaGACATCGTTCACAGAGATCTCAAACTGGAAAACATTCTTGTGGATAGTTATCACCATAGCGATGATCACACCATCATAAACATCAAGatcaCAGATTTCGGACTGTCCGTGCAGAAAGGTGGAGTGAGCAGTGGGAACATGCTGCAAACCACATGTGGGACACCCAAATAcatggCACCTGAAGTGATTAACGGCCATGAGTACAGCCAGCAGTGTGACATGTGGAGCATCGGCGTCATCATGTACATGCTGTTAAGTGGAGAACCTCCATTCAAGTCCAGCTCTGAGGAACATCTGTTTGAAATGATTAAGAAAGGAGAGCTGGACTTCTCCGCTCCTGTGTGGGACACCGTCAGTGATGCAGCCAAAACGGTGCTGAGCTGTTTGCTGAAAGTCGACCCAGCACATCGCATCACAGCCAGTGAGCTGCTGCATAACCCCTGGGTCACGGGAGACACGTCCACGAATGCCTCCCCCACCAACGTGCTGGTGATGATGCGACAGTTCCGGAACGCTCCAGAGGATGACGAGAGCGAGGAGGTGAGCGAGGGGATGGGAAGCCTCTCTCTCAGCTGCTCTCAGGACAGCGTGGTCGAGTCTGTGGCCTCCCCAGAACCTCCATCTGCTCCTCCCTCTGCTCCTGGATGTGCTCAAGCGCAGACACTCAGCCTCAACGGAGACCTGAACAGCAGCAGCAAGAAACCTTCCACGTCCACAAAACAGaaaaagaagaaatcctACTCTTACGACGGTACGAAGAAGAACGGCTCTGCTGTGAAGACGAGCAGCACGCTGAGTTTGAGCACGGTGCAGTCCTACACGGGTAACAAACAGACGAGCACAAAGCGCCACAGCCAACCGGACAAGCAAGAGAGCATCAGTAAGGCCTCCTCTCCCAAACCATTCACACCAAATGATAGCCACGCCCCCTCCTCCACAGGCCACTCCCACAACTCAGCTCCAGGGCCAAGAAGATCAGTTAGTTCACACACACCTTAGAGTCCGGTGGAGGAAATGCCGAACCCGGGGTTCACTGGGCAGATCTACTGGACTCATGAGACAGAAAAAGTCTCAAGCGCCGTTCGTCTGACTTCATGATCCGTTTCTCCTGGATGGTCTTCAGAGAACTTGTACAGGATAAACTATTTTAGACTTAAACTTGAAAAGCtggataaaaatgaaaaaaaaatcaacccaCTGCTGTTTCAAGTGTATGGGTTTAAGATTATTTAATGATTGCGTAAGACCTGGGTGAGCATTTGCCTCGAGTCTCGTCTGCCTTACACTTCCtgggaaatattttttattttaatttttgctcCAATATGAAAACAAATACTTATATTTCTAAACAGGGTTTCAGGGTTTGATAGCTGTagtagttcttttttttttaactatagaTCCAATGCCACATAACCAAAGATACCTGGAGCCACTTTAAACTGTAATCGTATTCACGCCTCACATAAACAAACACCACAACAAAGCAACTGTTAATTCTATAAATActaatttaaatagttttaaaaacttGCCAAATCACTACTGTGTATAGATAATGATTTTacttcatcaataaacacacataGTTCATGTTGTAGTTGAGAAAaacctttattttcattttaccaATAAACTTCAATCATTCATTCTGCTTCAGTAA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08813 STK33; serine/threonine kinase 33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205566 lncRNA downstream 182079 263184 ~ 266538 (-) True G173639
TU205512 lncRNA downstream 233156 155542 ~ 215461 (-) True G173586
TU206042 lncRNA upstream 36599 506782 ~ 519973 (-) True G174054
TU206069 lncRNA upstream 98230 568413 ~ 569242 (-) True G174074
TU206125 lncRNA upstream 326211 796394 ~ 798832 (-) True G174127
TU206147 lncRNA upstream 353456 823639 ~ 823896 (-) True G174147
TU206150 lncRNA upstream 359753 829936 ~ 830269 (-) True G174150
XM_026930689.2 mRNA downstream 112809 299224 ~ 335808 (-) True lmo1
XM_034308875.1 mRNA downstream 176045 267730 ~ 272572 (-) True ric3a
XM_026930344.2 mRNA downstream 352487 45726 ~ 96130 (-) True pde3b
XM_026930347.2 mRNA downstream 414451 30351 ~ 34166 (-) False calca
XM_026930391.2 mRNA upstream 3648 473831 ~ 480942 (-) True rerglb
XM_026930625.2 mRNA upstream 16462 486645 ~ 511403 (-) True trim66
XM_034308877.1 mRNA upstream 43973 514156 ~ 584811 (-) True dennd2b
XM_034308477.1 mRNA upstream 122620 592803 ~ 602182 (-) True tmem9b
XM_034308418.1 mRNA upstream 135586 605769 ~ 639000 (-) True scube2
TU205424 other downstream 414485 30281 ~ 34132 (-) True calca
TU206214 other upstream 491313 961496 ~ 963078 (-) True G174207
TU206257 other upstream 587473 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1177146 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 2132231 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2284172 2754355 ~ 2756525 (-) True G175048

Expression Profile