RNA id: XM_034308877.1


Basic Information

Item Value
RNA id XM_034308877.1
length 4107
RNA type mRNA
GC content 0.54
exon number 21
gene id dennd2b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 514156 ~ 584811 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGCCTTCAGCACGAGACACTGGGCGCGAGCGGCGCGGAGGCTTTTGTCCGCCTCAGAGAACATGAGCGCGCGGGGAAAGTTTCCCTCAGTACCGGCGCTTCATCGACGCTTTTTCCCTCTTTAACTGTGTTTGTAACCAGCTGGACACCATGACTGGGACACCGAAGCGCTTCTCTGAGgGTGAGCGGCGTGAGGGACATGACGGCCAACAAGAACTCAAAGGCCACGCCCAAAGCAGGAGGGGCTAAAAACCCTCAGGAGATTCCTGACAGGTGCCAGTCTGCGTCCCCGCCTCCTATTCTTTCTGGTGTAAAGGAACCGTGTCACGCTCAGTTCAGCGAGACAGAAGACGCCAGTCAGCAGAGCAGATACGCCAGAGCTGACACAAGAATCCAGTCTCAGAGGAACTGGAGTCAGAAAACGGCTAGCCTGCGCAGCGGCTCCACGCTTTCCACCGAGTCCCAGAGTAGACTCACCAAGGCCAAGAGCATCGGCTGTCTGGAGAAGAAGCTCAGCATCTACAAGGCGTCCAGTGGAGAAGACCAAGAGCAGAAGGATAACCAACTTACAGACGGAGCTCCTGGAGGAGATTCCTCCTGTCCTGGATCTGTCAGCTGGAGTACGCTGTCTttaacctcctcctcctccgccaAATACGGCCACAAGTGCACGCTGTCGCTCAGCCGGAACGGCACCGGGACCTCGTCTGTCACAATCCGGAAGAAGATCTCGGAATGGGAATGTCGGAACGTGACTCTTCCTAGAATGAGTCTGTGCTTGGACAAGAGGCCTGGCGGTGGGAGTGAAGTCTGCCCCAGCCTCTTGTCCTCTCCTTGTAGCGACAAAGCCTTCGACTTCAAGTCCATGCGCAGGATGAGCACGGCGTTTTCCGAGTGTTCCTATCCAGAGACCGAGGAAGAGGACGGAACCTCGGACCGAGAGTCTAGCGGACGCTTCCagaagagagaaggacagaagaCGTTCGTGCGCAGTCTTTATCCTCGTAAAGAGACGTCGGCCGTGCTGAACCGGATACAGAAGATCGAGCAGGCGTTGAAAGAAAGTCCTTCTGCTCCTCCAAAGTATCTGAGCAACTGTTACGGCTTGGACAAGTCACGGCAGAAGTCTTTCACCATTTCATCACGTCATGAGGACTTGGACAGCACGTGTGACAGCAAGCGGAGCAGCATCTGTTCTGTCGCCACGGAGCCAGACACTTACCACGGCTCAGAAAAACTCTCCAAGTTCAGACAGAGGTTCAGCGTGGCCTCCTTTATGTCTGAGAGCCCAGAGCTCCCCTGCGCACAAGGCCCGCCCGGCCCGCCCGGCACTCCCGTCAACCCCCTACCCAAACCCAAGCGCACTTTTGAGTACGATGCTAATCGGAACCATAAAGACTCTTCGCCTAGCAATGGAATACCTCCGAATCCCGACACTCGCCTTCCTCCGGCCGCCGTTAAGACACCTGAGAGCTCATTCAAGAGAACACCTGACAGAGAGTCGTGTGAGTCTGAAGATGCGGTGAGCCTGCCCTCCTCTTACCCCTCCTCACCCACGGAAAACGGCACCGCGTCCACGGAGAACCACAGCCGCCCCAGCTCCAAAAGCACTCTGGAGGAAAACGCTTACGAGGACATTACAGATTATAAATTCATTACCCAGCCCACCAGGCACGCAGAAGAAGTTCTAGTCCGCTGCCCAGTCGCGAGCGTTACGGAGCGACGCCGCGGCCCTGCGATCGTCTCTCAGCTGCCGCTCTCGACGCTCCGTAACGCCCTGACGATCGTCGCTGTACTGCCGCGTGTGGATTATAAGCGTGCTGCGTACCCAGGCGCCGCTTTGCTCGCacacaccacaaagaCATGTGTCAGAAATGTTTCCTGTCCCTCTCTCCAGCTCCCGTCTAAGCCGAGCAGTCAGTCTCTGCGGCTCCTGGcccaagctgacaggaagagcCACCGCTTGTCTCGCTTGTCTAAGAGACACAGTCATGATGACATGTTGCTGCTGCCCCAGCTGTCGTCTCCTTCCTGCGGCCTGCTGGACGACGGCCTGAGCAACGCCAGTGACACGCTGGCCTCCCGCAGACAGAGACGAGTCCCCAAGGTGGTGCAGAGAATAAACTCTATCTTCTGCACAAAACGAGGGAAGAAGAGACTGAAGAAGCTCTCGCTGTCCAATATAGAGACGGCGTCTCTGAgagATGAtaacagtgagagtgagagtgactCTGATGACAGGTTCAAAGCTCACACTCAGAGACTCCTGAAGCTGCAGTCGATACTCCGCCGTGCCCCGAGTTACCGCACGCTGGAGCTGCAGCTGATCGAGTGGCAGGAGCGGGAGCTGTTTGAGTACTTCGTCGTGGTTTCTCTGAAGAAGAAGCCCACTAAGAACTCCTACACGCCAGAAGTCTCGTACCAGTTCCCCAAGCTCGAGAGGCCGACTAAACAGATGCGAGAAGCCGAGCAGCGTCTCAAAGCCATTCCACAGTTCTGCTTCCCCGACGCTAAAGACTGGAGCCCCGTGTTCGAGTACAGCAGTGAGACCTTCTCCTTCATGCTGACGGGAGAAGACGGAAGTCGGCGTTTCGGATACTGCAGGCGGCTCCTGCCGAGCGGGAAAGGGCAGCGTCTCCCGGAGGTGTATTGTGTCATCAGCAGGTTGGGATGTTTCGACCTGTTCTCTAAGATCCTGGATGAagtggagaggaggagaggaatcTCGGCAGCTCTGGTCTACCCCTTCATGCGGAGTCTGATGGAATCTCCGTTTCCGGCCCCCGGAAAAACCATCAAAGTCAAAACCTTCCTGCCTGGTGCAGGCAACGAgGTGATGGAGTTGAGGAGGCCGATGGACTCGAGGTTGGAGCACGTGGATTTTGAAAGCCTCTTCAGCTGCCTGAGTGTGAGacaagtggtgtgtgtgttcgccTCGCTGCTGCTGGAGCGCCGGGTCATCTTCGTGGCCGATAAGCTCAGCGTCCTGTCCAGCTGTGTACACGCCGTGGTGGCTCTGCTTTACCCGTTCTCCTGGCAGCACACCTTCATCCCTGTGCTTCCCTCCTCCATGGTGGACATCGTGTGCTGCCCGACTCCGTTCCTGGTGGGAATCCTGTCCAGCTCACTGCCCAAACTCAAGGAACTGCCAGTGGAGGAGGCTTTGATGGTTCATCTGGGAACAGATCGCTTTATCAGACAGCTGGACGACGAGGCTTCACTCCTTCCACGCAAGCTACAGGCCGCGCTGGAGCAGGCGCTCGATCAGAGGAACCACCTCATCGATCAGGACTCGGACAGCGAGTCAGACGACGagtGTAACACGTTGAACAGCGTGGTGTCCGAGGCCTTCATCCGCTTCTTCCTGGAGACCATCGGACACTATTCGCTGTTCCTGACTCAAGGCGAGAGAGGCGAGCGCGTGTTCCAGCGTGAAGCCTTCCGCAAATCCGTGGCCTCCAAAAGCATCCGCCGCTTCCTGGGAGTCTTCATGGAGTCTCAGATGTTCGCTGGATTTATCCAGGACCGAGAGCTGAGGAAGAGCAGAGCTAAAGgtctgtttgagcagagagCTGAGCAGTACCTGGAGGAGTTACCTGACACCGAGCAGAGCGGAGTCAACAAGTTTCTCAAAGGACTAGGTAATAAAATGAAGTTTCTCCATAAAAAGAATTGATCATGTGGAACCCAAAAAACACTAAGGACGTCTTTCCAGCACTACATTTGAAGACTTAACACAACTCATATATCTGAAGACGTGACAGCTGAATTGAGTCGTGCAGTTAAATGtcttgtaaatatttatgaattatgatGTAGCTGTGTTTATTCCATTTCCTGGTACTGTGTATGTGACAGAAGGATAAAGACAGAGTGGTACTGATGGGTCTGTGATGATACTGGTACAGCACTaccacggtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagatccactGAATAAAGAGTGAATAAATGGAAACGAGTGTGAGGTGGCTGTACAGAGACTGTGTAGTATTTAACGCCAAAGTGCATTTTGTACATGTATTAACACTTGAAGATTCCCGTACTTGTaattctttgtaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K20161 DENND2; DENN domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205619 lncRNA downstream 57971 455864 ~ 456185 (-) True G173685
TU205566 lncRNA downstream 247618 263184 ~ 266538 (-) True G173639
TU205530 lncRNA downstream 326994 185451 ~ 187162 (-) True G173603
TU205529 lncRNA downstream 327715 185451 ~ 186441 (-) False G173603
TU205528 lncRNA downstream 328342 184027 ~ 185814 (-) True G173602
TU206125 lncRNA upstream 211583 796394 ~ 798832 (-) True G174127
TU206147 lncRNA upstream 238828 823639 ~ 823896 (-) True G174147
TU206150 lncRNA upstream 245125 829936 ~ 830269 (-) True G174150
TU206157 lncRNA upstream 278120 862931 ~ 953387 (-) True G174156
TU206208 lncRNA upstream 363662 948473 ~ 1001717 (-) True G174202
XM_026930625.2 mRNA downstream 2753 486645 ~ 511403 (-) True trim66
XM_026930391.2 mRNA downstream 33214 473831 ~ 480942 (-) True rerglb
XM_034308876.1 mRNA downstream 43973 448617 ~ 470183 (-) True stk33
XM_026930689.2 mRNA downstream 178348 299224 ~ 335808 (-) True lmo1
XM_034308875.1 mRNA downstream 241584 267730 ~ 272572 (-) True ric3a
XM_034308477.1 mRNA upstream 7992 592803 ~ 602182 (-) True tmem9b
XM_034308418.1 mRNA upstream 20958 605769 ~ 639000 (-) True scube2
XM_026930651.2 mRNA upstream 62248 647059 ~ 660384 (-) True slc7a6
XM_026930298.2 mRNA upstream 80766 665577 ~ 678091 (-) True si:dkey-181f22.4
XM_034308774.1 mRNA upstream 104357 689168 ~ 710231 (-) True adgrg1
TU205424 other downstream 480024 30281 ~ 34132 (-) True calca
TU206214 other upstream 376685 961496 ~ 963078 (-) True G174207
TU206257 other upstream 472845 1057656 ~ 1059234 (-) True G174247
XR_003403705.1 other upstream 1062518 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 2017603 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 2169544 2754355 ~ 2756525 (-) True G175048

Expression Profile