RNA id: XM_034308884.1


Basic Information

Item Value
RNA id XM_034308884.1
length 4596
RNA type mRNA
GC content 0.56
exon number 27
gene id plekha7b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1517346 ~ 1638262 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aacaccACTGGCCGCCAGGAGTTTGCGCTTCCCCTTTAACAGAGCAGAGAAGAATGAAAGAAGAGTGAAGCGGGATCATGGCGGCTCCTCTCGGCCGGGACACTCTACCTGAGCACTGGTCTTACGGAGTGTGCAGAGATGGACGAGTGTTTTTCATCAACGACCAAACTCGCAGCACCACTTGGCTCCATCCCCGCACAGGAGAACCTGTCAACTCGGGCCACATGATCCGATCAGATTTACCGCGGGGATGGGAGGAAGGATTCACAGCAGAAGGCGCGAGTTACTTCATCAACCACAACCAGAGAACCACGGCGTTCCGGCATCCCGTGACGGGTCAGATATCTCCGGAGAACACGGATTTCGTCGTGCAGGAGCTAGGGAATTCCCACATGTCGAAGCCGCAGTCAGAGCCGAGACCCTCCAGCATGGTCAGCGAGTCCTCCGTGGCCGTCACCTCGTCCACCGTGGACGCTCCCTCGGGACTCAAGcCTATAAAATCCAGTGGAAGAGTGCACAGCTTTGGAAAAAGAGATCATGCCATCAAGAGGAACCCGAACATCCCTGTAGTAGTGAGAGGATGGCTCTacaagcagGACAGCTCAGGAATGAGACTGTGGAAGAGGAAGTGGTTCGTGTTGTCAGATTACTGCCTCTTTTATTATAAAGACAGTCGAGAGGAGACGGTTTTGGGGAGTATCCCACTGCCGAGCTACGTCATTTCCCCGGTGGAGCCTGAAGACCACATTAGCCGCAAGTTCGCCTTTAAGGCGAGTCACACAGGCATGCGCTCATACATTTACAGTAAGAACTCTGTGATTGGCTCGCAGGCCGAGCACGGCGGCATGAGGACCTACTACTTCAGCGCAGACACGCAGGAGGACATGAACGGCTGGATCCGAGCCATGAACCAGGCGGCGCTCATGCAGAGCCACAGCTTAAAGAGAGAAACTTCCAAATCTGAGCAACAGGCCATGCCTCAGACCAATCACATCCCAGCAAGCAGTAACAGCACCGCCCACGCTGAGGTCCTGCACCAATCAGGGTGGGTGGAGACGACAGAGCGAGAGCCCAGACACGAGCAGGAGGTAGAGGCACGCCTGGAGGTCCCGGTCAAAGTTGTCTACACAGGAGATGGAGATGCAAACGGTGTTTCTCTGGAATCTGGAGCTCCATCTCGATTCGCGTCGTCCGGGCTGCTCAGAGGAACGGCGTGCACAGCGAGCAGAACGGCGGCGTGGCGTATCAGAGGGGTCTCGCGCCCCGAGCAGACACGGAGAAACACGTGCAGAGGAAGACGGCGCTGGCGCAGGTGGAGCACTGGGTCAAAGTTCAGAAAGGAGAGCCTAAAAGGTCATCTTTCTAGCCATCCTGTCTCGGAGTACACTCTCCCCAGACGCACTCCTCCCCTCCAACCCAAGCTGGTCATGACCGAGTCGTACCAGTCTCTCCCGAAGAGCGCTCGCCGTCCGTCCGCCAGCTCGCCCCCGGTGCCCCGCGACATGCCCAGCGACTACAAGTACGCCCACGACCGTCTCAGCCACTTCCGCATGTCCACAGACGAACGTATCGCTGCTAAAGAGGGCATGGTGTGGCAGCTTTATGAGTGGCAGCAGAGGCAGCGTTTCCGTCACGGAGGTCCCGTGGTTCCGCCCGTCTTCACCTCACCCGACTGCGTGGACGCGGCCTCCTTCAGGGTGATGCTGGAGGTCCCGCGCTCGGTGTCCGTGCCCCCTTCACCATGCGAAGTACCCCCCTCCAAACTGGCATCGCCCCGCAGACCTCACACCCCCGCGGACAGAGTGACGGTGCGACCCATCGACGAAGTATCGAGCGTGGACGTGGTCCGGTCCACTTCACCAAGGGCCGTTTCCAAGCCAGTACAAATAGACAGAAGATCGATGCCAACGATGggctacatcacacacaccgtCAGTGCGCCGAGCTTACACGGAAAAACGCCGGAGGAGCTGACCCTGCTCCTCGTCCAGCTCAGGAGACACCAGGCCAAGATGGCCGACGCATTCGCTCACCTCCACAACGACGGCCTCTCAGGTCCCAGCCTGCAGGCAGATGATACGTACATGCAGCTGAAGAAAGACCTGGAGTATCTTGACCTGAAGGTCACAGGAAGGGAAGCGTTGAAGGACAGCAGACCTCCACGGCCGGTTAAAATAGCCGAAAGCGACGTTGATGTGAAGCTGAGCAGATTGTGTGAACAAGATAAAATCCTTCAGGAGCTGGAGATGAGGATCCGCACGCTCAAAGAGGACAAGgataAGTTAGAGTCGGTTCTGGACGTGTCCCATCAGCAGATGGAGCAGTACCGGGACCAGCCGCCCCACGCCGAGAAAATCGCCTACCAGCAGAGACTGCTGCAGGAGGACGTCGTGCACATCAGGGCCGATATTTCTCAAGTGTCCacgGAGATGGAGAAGGCGTGGACGGAGTACAGCAGGTTGGAGGCGGATGTGGAGAGATTGCGATCGGCGTTGCAGGAGCAGATGAACCGCAGCAGCCTCTCGCAGCAGGAGAAAAGCCAGCTGAGGAAGGAGCTGTGGCGCATCGAGGATGTGATGGCGGGTCTGAGCTCGAGCAAAGCGAACTACAAAATGATCGTCGACTCTGTGCAGAATCCAGGTGAGCGCGGGGCAGTCCCCCCCGTCATCACCCTCACGCACCGGAGCCACGCCCGAGagaGGAAACTCGTGCCTTCGGCGTTGTCTCCATCTGTGCCTTCTATCATGGCGGGAGAACCGAAACCGGCTCAGTCGAGTCCTCACCTCAGTCCAGTGCAGCCCAGCGTTCACACCTTCCAGTTCTCCCAAACTCTCCACAAGCCAGTATGGACTGAAGAAGACGCTCCACCCAGACCTCCCCTCCCCCACCTCTACAGTCCAGATGACCTCCCTCCGGCCATCCCGCCCCTTCCCAAGGAGACCTCCGTCATCCGCCACACGTCCGTCCGCGGCCTCAAGCGTCAATCCGACGAGCGCAAACGTGACCGTGAGATTGGACAGTACCCCAACGGAGACAAGGTGGAACTGCGGACGTTCCTCAGTGAACCTGAACTTCTGGGAGTCATGGGACAGATGAGTGGTTTGGGGCAAGATGGAGGCTACCAGACCTTACCAAGCAGAGGTGTGACAGGTTCTACATCCAGACTCCATCAGTCcacaaacatctcctcataCGTCACCCTGAGGAGAGGAACCGACACGTCCAGCTTACAGGAGAGACCAAAGAGTGCCTTGGAGCGTTTGTACTCGTCTGAAGTGCCGCTGCAGCAGCAGCGAGGTCGCATGAGCGCTGACGAGCAGCTGGAGAGGATGAAGCGCCACCAGAAGGCGCTAGTGCGAGAACGCAAGCGCACCCTGAGCCAGGGCGAGCGCCAGGCGTCTTCATCTCGccctccttcctcttcctcacggCCCGTTTCTGCAGACCTGGGATCAtgGAGGCGTGAGCAGGAGTTTGATTTGCAGTTGCTGGAGCGAGCCATACAGGgcgaggagaaggagaaggagaaagagaaggagaaggcaTTGGAGCGTATAGAGAGGCAGCGTTCACATTCAGATGAATGGATCACGCTGCACTTGAACCCTCGCCGAGAGCTCGACCTCGAACCGCTCGACTATCAGCTGGACCTCAGCAAGGAGCTGTCGAAGCCGGACAAAGTTCTCATCCCCGAGCGATACTTGGACCTGGACCCCGAAGAGCCGCTCAGTCCTCAGGAGATGGAGGCGCGACACCGCAAAGTGGAGCGCATAAAGAGCATCCTGTCCAAGtccagtgtaCAGAACATTCCGGGTGTGGAGAAGCCGATGCTGTCGGAACTGGACTCGGCTCTTCAGGATCAGGAGAGGATCATCACCATGTCCTACGCTCTGGCCTCTGAGGCTTCAGTCAAGAGCAAGCAGGTGGCAGccaaAGCCGTGTCCGGTCATTGAGGTGCTATCACACGACGATCACTCGCTCTCCTTTCGTTCTTTTAACGGTTGACGAACCGAAAAGCTTCGAGCGTCCAtttttccatccatcctctgcATCGTAGACGAGAAGTTAGCGTGCTTTTGGACTCCAAAATAtcagcaggggaaaaaaaaggactcACGTGTGAAGCGAGTGTTTTGCCGTGGAAGCTGCAGTGATGATAATAAAAGCTGAACATCTCTAACAGAGCTAATAGTGCGATAGAAAACTTAATTTGCACTTTTGTACTCATGCACTGCATCATAGAGCAAATAGAGAACATTTTTAGCCATCATCAAGGCTCTcgaggatgaagaggatgaagaggatgagaaTCTGTGAATGTTTAGAAAGCAGAAAGTATTACACTTTAGCAGGACAGATGTTGGTACAGATGTTTTGAAGTTGATTGTATTTTTGTTGACTGAGATGCTATTCTTACaccaaaatcacaaaatattattttttgtatctaGTGTATCTAGCACTGCCAGGTTCCACTTAGCTTGCTAAATGAGCTTTATTTTTGCGGACACTGTTTGTTGGATTAACAATATTTTTCTTGCGGAAATCTCGtgggagggaaggaaggagggagggtaCGTAGCGTcctctgttttt

Function

GO: NA

KEGG:

id description
K23797 PLEKHA4_5_6_7; pleckstrin homology domain-containing family A member 4/5/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206375 lncRNA downstream 47364 1465494 ~ 1469982 (-) True G174345
TU206358 lncRNA downstream 97601 1419369 ~ 1419745 (-) True G174329
TU206354 lncRNA downstream 103156 1409997 ~ 1414190 (-) True G174325
TU206351 lncRNA downstream 132828 1381317 ~ 1384518 (-) True G174322
TU206348 lncRNA downstream 180325 1334760 ~ 1337021 (-) True G174319
TU206422 lncRNA upstream 78575 1716837 ~ 1717245 (-) True G174390
TU206660 lncRNA upstream 218621 1856883 ~ 1904081 (-) False cd82a
TU206690 lncRNA upstream 352982 1991244 ~ 1991701 (-) True G174622
TU206685 lncRNA upstream 355839 1994101 ~ 1995636 (-) True G174617
TU206672 lncRNA upstream 376495 2014757 ~ 2015424 (-) False LOC113536731
XM_034308751.1 mRNA downstream 19620 1324651 ~ 1497726 (-) False sox6
XM_034308752.1 mRNA downstream 19620 1324651 ~ 1497726 (-) False sox6
XM_034308749.1 mRNA downstream 19620 1324651 ~ 1497726 (-) False sox6
XM_034308745.1 mRNA downstream 19620 1324651 ~ 1497726 (-) False sox6
XM_034308746.1 mRNA downstream 20668 1324651 ~ 1496678 (-) True sox6
XM_026930538.2 mRNA upstream 8858 1647120 ~ 1653478 (-) True rps13
XM_034308641.1 mRNA upstream 29364 1667626 ~ 1687076 (-) True caprin1a
XM_034308644.1 mRNA upstream 139079 1777341 ~ 1831151 (-) True ext2
XM_026930876.2 mRNA upstream 194064 1832326 ~ 1874531 (-) False tspan18a
XM_026930875.2 mRNA upstream 194064 1832326 ~ 1874531 (-) True tspan18a
TU206257 other downstream 458112 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 554268 961496 ~ 963078 (-) True G174207
TU205424 other downstream 1483214 30281 ~ 34132 (-) True calca
XR_003403705.1 other upstream 9067 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 964152 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 1116093 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 1500565 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 1501808 3140070 ~ 3140161 (-) True LOC113536794

Expression Profile