RNA id: XM_034308947.1


Basic Information

Item Value
RNA id XM_034308947.1
length 7047
RNA type mRNA
GC content 0.44
exon number 14
gene id tead1b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3741641 ~ 3812372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCATTCCTGCTCTCATTCCGCGCATTCTTCGCATCTCTCGGTGTGTCGGCGATCCGCGCTCGCATTCCCGCCCGGCCCTGAACCGCCACACTAACTTTACGCACTTTGTAAAAGAAATTCTCACACCTTaggaaaaaaaccaacaacaacaaaagggGCGGAGCTGTTAAAAATATATCGATTACGGACGTTAAGGTCTCACCCTAGTGTGCTCCAGGCTTCGGCTTGGAGGTCCCAACCGCCAAAATTGATCCCAGCAGCTGGAGCGGCAGCGAAAGTCCTGCCGAGGACATGGAGAGGATGAGCGACTCTGCCGAAAAGCCCATGGACAATGACGCCGAGGGTGTTTGGAGCCCTGACATCGAGCAGAGCTTCCAGGAGGCGCTTGCCATCTACCCACCCTGTGGCCGTCGCAAGATCATCCTCTCTGATGAAGGCAAGATGTATGGTCGGAACGAGCTGATTGCCAGATACATCAAACTGCGGACTGGGAAGACGAGGACGAGGAAGCAGGTGTCTAGTCACATACAGGTCTTAGCAAGAAAGAAAGTGCGTGAAATCCAAGCCGCCATCAAGGTAGGTCTGACTCCGCCCCCCGTCGCGGGGGTGGGGGTTTTCATCACTATGGTTAcaggctgtgtttttcctttgtcTTCCCTCCCCCGCTCCCTGACCCCACAGGTGTCTAGTCACATTCAGGTTCTTGCCCGGCGGAAATCTCGCGAGTTTCATTCCAAGCTAAAGGTGACGAGCATGGATCAGACCGTGAAGGACAAAGCTCTCCAGAGCATGGCATCCATGTCCTCAGCACAGATCGTCTCTGCCACGGCTATCCACAACAAGCTGGGCTTGCCAGGCATCCCTCGACCCGCCTTCCCTGGAGCGGCTGGGTTTTGGCAGGGCATGATATCCACGGGACAGCCAGGATCCTCACAAGACATCAAGCCGTTTGCACAGCAGGCCTACCCCATCCAGCCCACCGTCACAACAGCAATTTCAAgtTACGAGTCCACAGCAGCACCAGCACCCACAGTACCAGCATGGCAGGGCCGCTCCATCGGCACCAGCAAACTCAGGCTGGTCGAATTCTCAGCTTTTCTGGAGCAGCAGAGGGAGCCGGAATCATACAACAAGCACCTTTTTGTACACATTGGTCAGACAAATCACTCCTACAGCGATGCCCTGCTGGAGTCGGTGGACATTCGTCAAATTTATGACAAATTCCCAGAGAAGAAAGGAGGGCTGAAGGAGCTTTTTGGCAAAGGCCCTCAGAATTCCTTCTTCCTCATAAAGTTCTGGGCCGACTTGAACTGCAACGTTCAGGAGGAAACCGGGGCCTTTTATGGCGTCACCAGCCAGTACGAGAGCCCGGAGAACATGACCATCACCTGCTCCACTAAAGTCTGCTCATTCGGCAAGCAGGTGGTGGAGAAAGTGGAGACGGAATATGCTCGTTTTGAGAACGGCCGCTTCGTGTACCGGATAAGCCGCTCTCCCATGTGCGAATACATGATTAACTTCATCCACAAGCTCAAACACCTGCCTGAGAAGTACATGATGAACAGTGTGCTGGAGAACTTCACAATCCTCTTGGTGGtcacaaacagagacacacaggagaCCTTGCTGTGCATggcgtgtgtgtttgaggtgtcgAACAGCGAGCACGGCGCTCAGCATCACATCTACAGACTGGTGAAAGAATGAAGCTCGTGCCAGCCAGCAGATCTGTCCTATAGACTCTGAACCTCAATAAAAAAGTGGCAGTGCCTCTAGTTCAACACTCACCCGCAGCGATTCGAGCTCTCATCCGGGTgacacttattattattttttttttcagtctttattaATGTATATGTGTTCGATGTTTTGACTGCAGCTGTGAATCACGGTACAGTTGTATTATGTTTTGATACAGGAAAGAATCATTTTAAAGGAAGCCTAATCGACTTTTCTCTGTaggttgtgtgtatatataaagtgGCAGTATCGGTAGACTTCGAGGTTGGCTTGAATTAGACTACATCTGGCTGAGAAAGACAATGTTTTAGGTTTTAAACCTATTCTAATGTACACCTTAAAAGCAGATTTAGCCTTTAGGTTCATATAAAATACTGTCTATGAATGTGTACGTGtctgtgtataaatgtatataccCACATACCTGTAGTCTTTccaaagattaaaaaagtatttcatTTTGGAACATTTGGTTGATTATAGAGGAATAACTGTAGAGGccatcaaaataataataataataataataattataataataataatcataatcataataataatacagttacTGAATTTCGGCATCTGTAGCATTCAGGGAATTTAAAAGTCCAGCCCTTGAAAGATCTCATGTGTCTAACCTGCAATACTCTACTATATCTGCTATACTGCAAatatactgctcaaaaaaaagggaacacttaatcattacagtatagTCAATTAAACTTCAGGGATATCAGTCTGTCCAGTTAGGAAGCATACGTGATTGTGAATCAGTTTCACCTTCTTTGGTGCAAATGAAAGCGACAACAGGTGCACTGGAGAGGCAACAGCAAGACAACCCCCAAAAAGGGAATAGTTTTTGCAGGTAGTGGCCACAGACAGTTGCTCTCTCCTTATCCTTCCTGACTGATTTGTctctagttttgtgttttgttagggtCCTTGTCACTATTTGTAGCATGAGGAAGTACCTGCAATCCAATCAGGTTGCACAGGtagtccagctcctccaggatggcacatctaTACGTGCCGTCGCAAGGAGGTTTgatgtgtctcccagcacagtttcaggagcatggaggagataccGGGAGATGGGCCGTTACACGAGGAGAGATGCACGGGGCCGTAGAAGGGCAACAACCCAGgagcaggaccggtatctgctcctttgggtgaggaggaacaggaggagcactgccagagccctacaaaatgacctccagtaGGCTACTGGTGTGAATGTTTCTGAACAAACTGTCAGAAACAGACTCCATGAGGGTGGCATGAGGGCTTGATGTCCTCTAGTGGGACCTGTGCTCACAGCCCAGCACTGTGCAtctcgattggcatttgccagagAACACTAGAATTGGCAGGTCCACCATTGGCGTTGTTTTCTTCAcggatgagagcaggttcacactgagcatatgtgacagacgtgaaagagTCTGGAGAtgcgttatgctgcctgtaacatcatCCAGCATGACTGGTTTGgcggtgggtcagtgatggtctggggaggaataTCCTTGGAGGGTCGCACAGACCTCCACATGCTAGCCAGTGGTACCCTTATTGCTGTTAGGTACCGGGATGAAATCCTCAGAGCCACTGTCAGACCTTACACTGGTGCAGTGggccctgggttcctcctggtgcaagACAgtgcccggcctcatgtggccaGAGTGCGTTGGCAGTTTCTGGATGATGAAGGCATTGATGCCACTGACTGGCCGTCAGGTTCCCCAGAActgaatccaattgagaacCTCTGGGATGTTATGTGTCGAAGCCGCCAAGTAGctgtccaggagctcactgGACATGATCCAGGTCTGGGAGGAGAtcccccaggacaccatccacCATCTCATGAGGAGCATGCCCAGACATTGTCGGGAGTGCATAAAGGCACGTAGGGGCCATACACACTACTGACTTACATTATGAGTTGCTGTGATGAAATTCATGCAAGTTGGATCAGCCtgtaatttcaattttttactttgattttcaGTGTGATTTTGAATCTAGCCTTCAGTGTGCTGATGACTTTGGCTTCCATTGACCCTTACAACATCATTTTGTTCTCAACAAATGTCACAATGTATATAAGTAAAGATTTTCAACTTGAACATTTTGTTCATCGAGATCCAATGTGTGATATAAGTGTTcccttaatttttttgagcagtgtaatTCCCGCTAATGTTTTAGTGGTTAAACGAGTCactaagggtgctttcacacctattaatCCGTTTGTCGAGTCCAAGTCAGAGTGAATTGAATACTTTTGGTATGTTTTCTATAGTTTCACGAATCAAACGAAGGGCTGAAAACATTTGTGAAATACgtttttcattcattggtcagaaataagGCGACAGAAAAAAAGGTCAACAAAATAAGTCAAGTTGAaatgtgtagaaatcacaaaaatgacCCACATGATATTTTTGCCTTAATGTCAcacagatctgatttttttcaggactGTATAGACACAAAAATATGATCTTTTCCAATCAGACCTGACCCACTGCCAATGCGTGGTTCTAGATTGGATGCATGTCTGATTAATGACTATGCGACATGAATTTGGATGGTCAGAATGGAATTCATTTGGCTTTTTCACAACGCTCATGCACAGGTCATTGTCGATAGTGTCAGCAGTGTGCAAAAACAACAATGTAGGACAGTGACAGCAGTGACTACATTCAGTGGAAGGATAATCGGTAGAATCGATTAAGTAAACCTGGAAGGAAAATACTCAAACTGAGTAGTGTAGTGAAACAGTTGAAAACAAGTGAAACAAGTAATCTATGTGCGAATGCGGGACGTTTCGCTGGACAGATGTGCTCACAATAAAGACAGATGTAGGTCACGAACGTGAACAGTCAAGACAGACGCATCCGATCTGAGCAAAAAATCTGAATTGTGCAATGAAGCTTGTAATGTGAACGTagccaaaataaacaaacaaataaatcgaTTCAGAGTCGACACATTTTCTCACTACAATAAAACCGCGCTAGAGTTCAGTTGGAAGCAAACTGAGACCACCGCGCTCAGATGCTCTCATACTGGTTGTTTTCTTACCACACccgattgctgtgttctcacctgcctaaagaaccgCACCAAGGGTGAAAACACACCAGGTTTCGATTCAAACGGACTAAACGCTgcatgtgaaagcaccctagGAGCAAGAAAGCACTACATATAACACCAGAGGCGAGCTGATTGTCATAATGTCCCGAGCACTTGGATTCTTTTGGGACATGCCTTATCAAGCGaacctgttttcagtttattCGATGAGACACAATCATATTATCTGCAGACATCAGGGAAGATTCTTTCAGAGCTCGTCCTTTAATCGCATACCTGTCCCGTTTTGATGAGTCCTATCCCAGTGTCCTCTGCTGCCTTTAACCCCAACACCAAGCCTCTGTGGCCTCCTAAACTGCGAGCCTTAACCATGGCTGtgagagatttgttttttttccttaaaaaaaaaaaaagatgccacTAAAACTGTGAGCTCTTTCCTAAGCTGGAAGACTTTTCATGTCCTCGTCCCATGTCGTTCCATGGAAGTGTACAGTCACAGAGCTGCCAAAGCGTAACAAAGCACAGTGCCTTAATGGATGCCTATATTCACGTGAGCTGAGAAAACACTAAGATCATCATTTTGTGGTCTAATGAGAAAAGACTAGCGTGGCTAGTGTGCACGTCAGCTCAAACTACCACTACATCCTAGAAATCTAGTAAAACACTACCAAACTAGCCATGCCTTTCTTATcagaaaagaccaaaaaaaaaaaatccctggagGCACGATGAATCTCCTCCTCGTTTCCTGCACTGTAGCATACAAGTGCCTTTGGTTCACGTTTTTCCAGCTTAGAAAAGACAAGTCGTATTTTGCATGACTATGATCAGAACCAAATACGTGGATGTAAAGTCAAATATTCACCACAATGCCTTGCTAAAAGTTTATAGTAAACGACAAGGGACGGTGgttaaatagtaaaaatattatgtatCGACTTTTAATCAGAGATTATAATTATTTGTTctgttgtaaaatattttgagaCGCATCTCAGTTTGTGTTCAgtccagatttttaaaatcctgatCTTGTTAAAGACTGCTTGATACTGTAAATTGGAAGCCCTTTGATATTTtctctagactttttttttttttatcatccgAATGCATAACTGACATTTTCTTTAGGAGAATATATGAACACTATTTGAAGTGGATTTTAAAAGTCCACTTTATTGGTTGAAATCTTTACAAACCTTCGGCACAGTTTAACGTTATCCTTTAACACTATTCACCCAAGTTATTCATTTCACTCATTTCTAAACTGCTGTCATATGgttttaatagtttaattgaTCTCTGTGTTGTACCGCGTAATGTAAACTGTGGACTTTAGTATGCGTAACATGAAAACGAcaaattattttgatttgatttcccCATTTATTTCTCTGTTCTGGTTCACATTGTGTGAGTTGCGTATGGAGATTTTTCATGTATTACTGTTGTACGTGTACACGAGGTTTTTTTGTGATGAAATCAGTATATTCGGAAGCCCCGTGTGGCCGTGATGCTGTTACTGCTGCGCTGCTGGCACCTCGGACCTTCTGTTCCACCCAGAAGACGATCCCAGCCGCCCCGCCTTTACTTCACCTGGGAGCTGAATACGAATGGTCGTACGCTGAATGTTAAAAGGACATTAATTTTGATAGTAATGGACACTGAGCAGTCGCTTTCTAGAGGAATGATGACCGCACGTCAGCAGTCTAGCTCTTTGTTTcttgatttgtatttttgtctATGTGTAGGTACTGGTACCTCCTTTGTTCGTTACCATTTAAGAAGTTGGCTTTAAAGTGAACTATTCTCTAGTTCAAAAtagtatcattttaaaaaaaaaaaaaaaaactattgggTTTGTgtgcagagatttttttttttgtaaaaaggtgctttgtataaaattatatattctgGCTTTTCTTGGTACAAAGGCGTGAGATCTTTTAATATCATTAATGATGGTGAAGCGTTGGagcaaagtgagagagaggagacggGAAAACCTGCTATGTGTACGTGTTCCTTACTGCATATGGTCTTGTCTTTGCTCTGTAACATTTTTGATGCCTTCTTGATAAAGTGGTAGATATTTTGTAGCTTTCTAGATACTTTGTATGTATACcatattgaataaaataaataaggaaaaacG

Function

GO: NA

KEGG:

id description
K09448 TEAD; transcriptional enhancer factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207665 lncRNA downstream 159670 3549865 ~ 3581971 (-) True serf2
XR_003403695.2 lncRNA downstream 163668 3572658 ~ 3577973 (-) True LOC113536694
TU207646 lncRNA downstream 229409 3511991 ~ 3512232 (-) True G175483
TU207463 lncRNA downstream 531237 3210147 ~ 3210404 (-) True G175333
TU207460 lncRNA downstream 534670 3206751 ~ 3206971 (-) True G175330
TU207893 lncRNA upstream 109941 3922313 ~ 3922941 (-) True G175676
TU208008 lncRNA upstream 263772 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA upstream 271600 4083972 ~ 4086193 (-) True G175775
TU208115 lncRNA upstream 486605 4298977 ~ 4299868 (-) True G175854
TU208186 lncRNA upstream 687106 4499478 ~ 4504321 (-) False lto1
XM_026930382.2 mRNA downstream 4087 3735746 ~ 3737554 (-) True rassf10b
XM_026930850.2 mRNA downstream 62384 3659384 ~ 3679257 (-) False arntl1b
XM_026930848.2 mRNA downstream 62384 3659384 ~ 3679257 (-) True arntl1b
XM_034308989.1 mRNA downstream 63140 3660325 ~ 3678501 (-) False arntl1b
XM_034308797.1 mRNA downstream 100681 3625423 ~ 3640960 (-) False znf710b
XM_026930511.2 mRNA upstream 8864 3821236 ~ 3839338 (-) True parvab
XM_034308622.1 mRNA upstream 39475 3851847 ~ 3909893 (-) False mical2a
XM_026930830.2 mRNA upstream 39475 3851847 ~ 3909893 (-) True mical2a
XM_026930831.2 mRNA upstream 39475 3851847 ~ 3909892 (-) False mical2a
XM_034308621.1 mRNA upstream 39475 3851847 ~ 3909891 (-) False mical2a
TU207666 other downstream 169379 3569341 ~ 3572262 (-) True G175497
XR_003403706.2 other downstream 440371 3301139 ~ 3301270 (-) True LOC113536796
XR_003403704.2 other downstream 601480 3140070 ~ 3140161 (-) True LOC113536794
XR_003403703.1 other downstream 602734 3138827 ~ 3138907 (-) True LOC113536793
TU207151 other downstream 985116 2754355 ~ 2756525 (-) True G175048
XR_003403696.2 other upstream 42819 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other upstream 42819 3855191 ~ 3909889 (-) False mical2a
TU207939 other upstream 180354 3992726 ~ 3996433 (-) True bola3
XR_003403702.2 other upstream 236493 4048865 ~ 4049043 (-) True LOC113536792
XR_003403701.2 other upstream 240217 4052589 ~ 4052767 (-) True LOC113536791

Expression Profile