Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU223672 |
| length | 239 |
| lncRNA type | sense_over |
| GC content | 0.54 |
| exon number | 2 |
| gene id | LOC117598518 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 636497 ~ 638042 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU223629 | lncRNA | downstream | 102239 | 533507 ~ 534276 (-) | True | G188918 |
| TU223617 | lncRNA | downstream | 125506 | 509031 ~ 511009 (-) | True | G188909 |
| TU223616 | lncRNA | downstream | 127221 | 509031 ~ 509294 (-) | False | G188909 |
| TU223615 | lncRNA | downstream | 127844 | 506908 ~ 508671 (-) | True | G188908 |
| XR_003403575.2 | lncRNA | downstream | 496781 | 135208 ~ 139734 (-) | True | LOC113535197 |
| TU223648 | lncRNA | upstream | 54710 | 691599 ~ 784981 (-) | True | G188929 |
| TU223693 | lncRNA | upstream | 111849 | 748738 ~ 834576 (-) | False | c12h10orf88 |
| TU223634 | lncRNA | upstream | 133564 | 770453 ~ 772015 (-) | True | G188922 |
| TU223735 | lncRNA | upstream | 194931 | 831820 ~ 832815 (-) | True | G189010 |
| TU223765 | lncRNA | upstream | 242856 | 879745 ~ 880237 (-) | True | G189035 |
| XM_034309344.1 | mRNA | downstream | 133 | 633003 ~ 636382 (-) | True | LOC117598555 |
| XM_034309228.1 | mRNA | downstream | 15759 | 339066 ~ 620756 (-) | False | grid1b |
| XM_034309226.1 | mRNA | upstream | 56059 | 692948 ~ 718933 (-) | True | waplb |
| XM_034309261.1 | mRNA | upstream | 191308 | 828197 ~ 834760 (-) | True | c12h10orf88 |
| XM_034309345.1 | mRNA | upstream | 231148 | 868037 ~ 879127 (-) | True | vps35l |
| XM_034309250.1 | mRNA | upstream | 245805 | 882694 ~ 888949 (-) | False | becn1 |
| XM_034309252.1 | mRNA | upstream | 245805 | 882694 ~ 888948 (-) | False | becn1 |
| TU223922 | other | upstream | 928001 | 1564890 ~ 1565260 (-) | True | G189180 |
| TU223956 | other | upstream | 931397 | 1568286 ~ 1571073 (-) | True | G189199 |
| XR_003404831.2 | other | upstream | 1558098 | 2194987 ~ 2210979 (-) | False | LOC113547489 |
| TU224780 | other | upstream | 2156157 | 2793046 ~ 2814580 (-) | False | LOC117598559 |
| TU224784 | other | upstream | 2163187 | 2800076 ~ 2805906 (-) | False | LOC113547504 |
