RNA id: TU299430


Basic Information

Item Value
RNA id TU299430
length 5497
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G252944
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10904886 ~ 10912465 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTCGATGCCGTCATAGAGGGAGCTACGGAACGCTTTCACCACCCGCATCTTTGCTGTGGCCAGCGGCTGGTGCAGCCCACCTCTCCCACCCCTCATCCCCAGTCAGAAACTCACCCAGCAAAGGAAAAGAGGCTAAATGAaccagaaagaaacaaagattcaaacaacagaaaacaacaacCAAACAACCAAACAGGAAGAAAAGGTCAAGCATTTGGTTAAGTGCTTATCTGTTTTTCCAAAGAGCCTGTTTgttagcaagaaaaaaagaccTCCTGCAAATCTTGAACAATTTGAATATTGTTCtcgttttgttgttttctttttgctctttgttttgtgttctttatttttgcatggATACAGGTAAACGTTCGAGTATAATGCCCACAGTAGAGGAATGGAGGAAAGCAAAAAATTGGGTGTTAAATGATATTCTGTCTTTGCTCTGGATGTTAGCATGCCAGATTAGAGTCCACTGTCTCCCCACGCTGTCCTTCAAAGAAAAAATGCTTGATGGAAAAACtcgatcattaaaaaaaataaaacaaatcaaaatatgcTCCAttcaataaatcttttttttctcccaatgATGTTCTGCAAATCATTTGCAGCTAAATAAGGGTCACTGAAGCGAAAACAGAGTGAGTAGAAGCAGAGGAGAAGAAATGCTTAAAGAAGCTGTGATGGAAACTGAGGGTTAATGAGGATGACCTGTTAAATCAATGACCTCACATCCTGATGATCTTATAAATTCATGTCAAGTCCAGGTAAACTCCTGAACTTGCATTCTGAGAGTTGAGATCATCAGCATGACTTCAAGGTCTATAAGTTGCCCTAATGAAGGGTTAGTCGACCTTTACTTCATCAGTGAACCAATGAACGTAACAAATTAGTTATGGTTCCAATGGAAATCCACGTGATTTTGACCATGAAGATGTTAATTGAAAAAGAAATTCTTAAATAATTCTCACTCTTATTAACGCATTAAGACAAAGATGAAAAGGCCAGATTTACTGCAAGTAACCAAAGCTTCAAGCAACAGGAAAAGCTTTTATAACTCATGTTCAGTTATAAACATTTCCCAATGAAAACCCTCCTCAGCACATATACAGTGATTGACAGAGTGTATGTGCATTTAGCAGTGGACTGTTACCATACACGGTAAATGTTTGAACAAATGAGAGCGCTAACAGGCAAGAAGTAAACATGAATATCCATCAGTGGCAGTGTCCTCTGGGTCACAGTGTAAGCATGTAGTACAAAACCCCGTATGAAAACAAACATGATTTAGAGATCTATACAATCTATATATGAACATCTTTATAAAATAACTTCCCTATTTCATGCTATTAACTATACATTGACATTAGCACAGCAAGAAATTTctcacatttataaatgaccTAGTGCTTTTCTAATTGAGGATGGGGCCTGAAAAAAATTTGTTAGCATATAGTGACATCTACTTGCAAATCTTCATGTAGccagaagaaaaagaacaggtGAGTGACTGAGGTGACTTAAGAGCCAGGCACTTAGAGCATGAGAATGGGAGTCTTACACTGAATCGTGGACATGAGAGGACACTCAcgcactcgcgcacacacacgcaaatcAAGATGAAATGGGATGGGACACATACACAGCATGAAGTGATATAGCATGTGGTAACACACAGAACAGACAGCTGTGGGGTATGAGGCGAGGAAATTTCTAACCTGCTACCAAAGTCAAGACATGCAAACAAAGGAGAGATGATGGGagaaagctaaaataaaaatggaaaagctAAAAGCACCTCATTGTTTGAGAAGCTTTCCgaattcatttttaacactATAATGTAactcatgaaaataaatctcAGGCATAACAATCACTAATCAAGTGGTATTTAActatttcctgttataactaTAGATGTTGTATAAGTCTATACAAATATTTAGaatgtatttcatatttatataaaaatgatcatCTTAATATTCCTGAAAGAGGACTTGGAGTAGAACAGCCTATAGAAAAAGATAGAAGACAGGAAAAAGAACAATCATAAAGGAGCAATGAACCAATGGTATAGagcaagcgagagagagagagagagagagagagaaaagagagagagaaatagattaAGAGCTGACGGATGGATCTGTGGAAGTAAGAAGTACAGAGATGTTAGGAGACGCTTTCACAAAATTTCAAACTGATGAACCACAAcctgcattatttaaaataaccatgagaaaaaagagaaagagagatagagatcaGAACCTTATAGGGCTTATACTCGAAGGTTTACCCCTTGCACAGGGCCGGAGCAACTCCCCACACTTTTGTATGTTTAATTACCGGAAAAGCTTTTGGGTTTTAGCTTTGTGCCACAGAAAACCACGCTTGACAACAGAAGCCtcccgaaaaaaaaaagaagaaggggcTGCCATGTTCTCTCTGCACTTCCTCAAATCgttaatatataattttctcCTCTGAGAGCAGGAACAGTGGTTGTGCTACATGATCAGACGACAGCAGAATTCCTTACCAAATTTTATGGTGTTCCATTTCTATGCACCATCATTCTAGAGGCAGAAATATGTGCTCTAATGTACACAAAACTTTGTAAAACTTTGGGGAAGTATAGACTGGGATGGCTATTTGAGCTACTGTTCCATTATGAATGATTACATATAGCTCTGAAGTGGATGCTGGAATCTGCATGTAACCCAACCCTAAGAGGGAAACTCTAAACTGCAAACATCTCCACATCAGAGGAGCCAACGAGGCACATAACAGAGTGCATTGATGCTGTTAAGTGCTCTGATTGAATGAAagcaaagagacagagagagacagagtgagagagagagaatggctTACTTGGCCCATCCAGAGgatacagaaaacaaaaccaagCCTAACAAACAAGGAAAACCAAACAGCAAGAGGAGAGGACCAATACAGCAAGACGGAGGGGTGGGAGGGACACGCAAACAGCACTCCACACAATTACACAGCCCAGCTTGCAAAGAGCCACTCACAGAAACCACAATAACCACTTTccaataaaaaaacagtagatatacagtacatgataTACACTGCACAAGtgcaatgtgtgtatgtgggcaAGCAGGCGTGCTGCAGAGTGTTTCTGAaacatttattgtgtgtttgccAGTGTAACTCTGTCAACAGTTAGAGGTGTGAGatgtgtatgtctgtctctgtgtataaTGTGTCAGTGTTTCTATGTATAAATTGTGTGTTATGTCTGTCACAGGGAAAGCGGGGGACTCACTCCCAGGGGCGGCGCTTGCATTGGCAGTGGAGAGAACTACATGAGTGGGGGTAGAAATATTGGTTACGTCATGGAGCTGGCTGAGCACAGAGGAGCGCCGTCTCACTGCACCCTGAAATGAACCACTCCTCTTGAATGTACTCACTACCTCCatctgcaggagagagagagaaccataacacacacatatacttcaGAGAGAAAAGGACAGAGCAAGAGGAGAAATCCAGGAGGAGAATATATTTGTGGTAACACTGTACCAAGTGAAAATTGTTATGGCATACAAAATTGTACCGCTCTTAGCCATTTGGACATTTACACCTAAGCAGCTTAAAATTACAGGCACAAACATTCTTCAGTGTAAGCATCAGTATAAGAACACACTTTCAAGTCCATCTGAACATATGCTGCGACTGTGTCAATCAATTCTGCAAATAGGAGCACTATTTGGTTTTTTGGGCATCTGGTTAAGACTACAGGTGTGCATCAGGTCTGGAATCACACATGATATAACAAAAAAGTAGCACAAGAAggtggtttttactttcatgaggAGCCGAGCAAGCAGTCACATATGAAGCTTGCATGACAAAGACCACGTTCACATTAACATGAGTCGCTGCAAAATGAATTTACAGTGTTCGTTTATTCATTCTTAAtaactgcctggtcagtgtCACTTTGATTTAAATTAGGCTtttagtttgtttgtattttgcaAAACAGAACCAAGTAAATTCATAAGACAATACTGTGgacaagtacaaacaaaaataataactgcgtAAGCAGGATTGAGAGAAATTATGAACTCCAGTGTAGCAGAGGTTGAGAAattgtcagagccagaattcataGACTATACTGACAGTGCTGACAGTTTCTCCAGTGTTTTCATGTTAAGattagggttcatatttaattgggaaaaaaataataataaacaagcaAACCTTCCAGTTTTGGCCATGTCCACCTCGGATTTAAATCagaatacagatatggatatgtGGAGCATTTAACAGATACAGTGTCAATGCATTACACACCTATTATGTATAAAACTGCAGAGGCTGTGTGTGAACATCTAGTGTCACGCTAAAACAATACAATAGTAGAAAGTGGTAACTGGATGTCTGTCTATTAAGGACCAGTGCATGTAGATGCTTAAAGTACACACTTTAAGACATAGTCTCTAGCCTTACATAACAAATTCCCCAAATGAATGAGTTTTAGACTACAACAATTATCAATTCACCCTTCAAATAAACAAAGGCAGGAATTGTGGTAAAACCACTTCTACACCTGCAGGGGAATCAGTGCTCCATTAATCTGATTATCTCTTTCAGAAGCGCAGTGATGACGGCTGGGGTGTACACTCTTTGCTTCAGCcacccttgaattaaagcctTGATCAAATTCAGCTGACTGATGATATGAGTCTTGCTGCTGTAATGTGTGCCGTGTTTTGCCAACTCTATGTCGGGTGAGGAGAGGATCGATGCAAATCTTGTAAGGGGCTTTGTTAGCACTTCTGTGGTTGCTACCCCTATGTTACATTCTGCAGTCTTCATCcatcatattcatgtatatGTGCGTTTTAGTAAGTACAGCAATAAATGAGTAACAGTGTAAGTGTTAGCAATCCCTAAAGACTGGGTGTGTCTGTAAGAGTGAATATGTGTGTTCATGGTTCTGAAAgtccctttctctctcagacGTATGGTCAGTAATACACAACAACTTTACAACTATGAGTAATTATGTTAAGAAGGACACAACGTTCCACACATCCTCTCAGACCTGTAGTCCACAGGCAATTTAAATAAGGTGCTATTGATTTTAACATTGTGCACCTACTTTTAGttctgtgtgtaaaacatttagGAAATTCTAACGGCTCCAATAATTGCATAATTATCATATACAGTGTCATTTCATAATGTGCTTGTTATTTGAATAGTGGGCTTGATTAGTAAAATACATTGGTACTAAAGGGGTCCAGAGAAGTTTTGTTCCCTGGCTTCAAAATATTTGAGAAGCTCCAATCTATAGAGTAGGATcaaaaattcagttttaatttcataacttatattattttcatatatacagtcccctctgaaagtactggaatggcctgggcaattcttttgtttttgctatacaatgaagacatttgagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299404 lncRNA downstream 38190 10866236 ~ 10866696 (-) True G252921
TU299403 lncRNA downstream 39186 10865360 ~ 10865700 (-) True G252920
TU299332 lncRNA downstream 122298 10782135 ~ 10782588 (-) True G252859
TU299329 lncRNA downstream 125286 10778985 ~ 10779600 (-) True G252856
TU299304 lncRNA downstream 193395 10710395 ~ 10711491 (-) True G252833
TU299463 lncRNA upstream 82351 10994816 ~ 10997436 (-) True G252967
TU299464 lncRNA upstream 82351 10994816 ~ 10997436 (-) False G252967
TU299468 lncRNA upstream 93487 11005952 ~ 11006617 (-) True G252969
TU299471 lncRNA upstream 97359 11009824 ~ 11015630 (-) True LOC113530950
TU299474 lncRNA upstream 109494 11021959 ~ 11023025 (-) False abhd6b
XM_034311977.1 mRNA downstream 47924 10853017 ~ 10856962 (-) False cfap126
XM_026920887.2 mRNA downstream 47924 10853017 ~ 10856962 (-) True cfap126
XM_026921072.2 mRNA downstream 106288 10795807 ~ 10798598 (-) True tnnc1b
XM_034312148.1 mRNA downstream 266230 10636501 ~ 10638656 (-) True sinup
XM_026921244.2 mRNA upstream 19641 10932106 ~ 10941252 (-) True emd
XM_034311886.1 mRNA upstream 30410 10942875 ~ 10973775 (-) True flna
XM_034311887.1 mRNA upstream 30410 10942875 ~ 10973774 (-) False flna
XM_026921186.2 mRNA upstream 86635 10999100 ~ 11004596 (-) False dnase1l1
XM_026921185.2 mRNA upstream 86635 10999100 ~ 11003766 (-) True dnase1l1
TU299234 other downstream 266168 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 435352 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 874893 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 2326286 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 3395139 7476274 ~ 7509747 (-) False ctnnbip1
TU299470 other upstream 101499 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 346578 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 360865 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 543556 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other upstream 543556 11456021 ~ 11462706 (-) True LOC113530309

Expression Profile