RNA id: XM_034312050.1


Basic Information

Item Value
RNA id XM_034312050.1
length 1723
RNA type mRNA
GC content 0.41
exon number 9
gene id abhd6b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11020531 ~ 11025009 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atccaaaacatatgaaatCATGTAGCACAACAAGGAAAAAATGAGACATGATGGGATTTTAATGGAAAGTTCAGCTGTTATCCCAGTGGGGTTCTGCTGATAAACTGTATTCAATCCAGTCGAACAGGGAATAATACATTACAAAATTCTTCTTGGCTGCAGTCCATTGTTCAGCTGCTATGGATCTGGATGTAGTGACCTTATCTGCCATTGCTGTGGGGACACTCGCTGTTCCACTTTTACTTTTCATGGCATTCTTTATGCTGTGGCCTTCATCACTCATCAAAGTTTATTTCTGGTACTGGAGGCGCACTCTGGGTCTGCAAGTGTACCATGCTGATTGTGGAGGATATCGTTTCTGTTACTCTTCCAGAGGGAGGCCTAGCGTCAGGCCATCCATCCTCATGCTGCATGATTTCTCTGCACACAAAGACACATGGCTCTCTTTGATTAAGTACCTTCCAAAACATCTACACCTTCTGTGCATGGACATGCCAGGGCATGAGGGAACAACACGTACCAGTGCAGAAGACTACTCTATCCAGGGACAGGTTAAGAGAATACGCCAGTTTGTAGAAACTATTCATCTGAACCGGAAACCATTTCACTTGGTGGGCACCTCAATGGGAGGAAATGTAGCGGGAGTGTATGCGGCTTGCTACCCCTCTGACCTCTGTAGTATGACACTCATCTGTCCAACTGGTATAAAGTACCCTTCCATGACCAAATTTGATAACCAAATGCAAGAGCTGGCACTCAGTGAGTACACGCTTGGCATCTCTCTCATCCCATCTACGCCACAAGAGATGGAGGACATGCTGAAACTCTGTTCCCATGTACGCTTCAAAGTCCCCCAGCAGATTCTTCAAGGACTGGTGGATGTACGACTTCCACACAATGACTTTTATCATGAAGTTTTTAGAGAGATTATGAAGAAGAAGTCTAAATATGCCCTGCATGAACACATGCACCTGATAACCACCCCTCTTCAAGTCATCTGGGGAAAGCAGGACCGGGTAGTGGATGTGTCTGGGGCATGTTTGCTGGCTGAGGCTCTGTCAAGCTGTCGTGTGGACGTGTTGGAGAATTGCGGCCATTCTGTAGTGATGGAGCGACCCCGACGTACTGCCAAACTGATCTTAGACTTCATCATCTCTCAGCAGAGCTTGCCAAATACCACAGCTAAGAAGAAATTCTAAGGCTTCCTTATAGCCAAGATATTTAGCTAATccttaatgtgtgttttgtttttgcctgTGTGAAGGTGTGCCCTGTCAGACAAGGCAGTAAGATGATAGCAGTttgatcatattttttatccttttgttattctaaatcaaattaaatttttatgtagtatgaaatacatttagatactgtatgttattGCTATAGTTCTCAAAGTGGAGCCTAGTGACCCTCatgggtctgtgaagcatagggttttttttttttttaaatgaagttacAGTGGTGATCAGGTTCAATCAAAATCAAAGATAGCTAgaattgttataattattattagattatacaGCTTTTGCACCTAATACTTTCACACTTTAATTAAATAGGCTTAATCCAAAGTTCAGGAACTTTAAAACAAGTATGATGTCATACTGAATCTAAGTGcagtttataataaaacagagaaaaatacTGTTAATCAAATCAATCTACATTTTAAAGCAGTGTAACTGGTTTATGTTCTGTGGATGGAATG

Function

GO: NA

KEGG:

id description
K16050 hsaD; 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299471 lncRNA downstream 4901 11009824 ~ 11015630 (-) True LOC113530950
TU299468 lncRNA downstream 13914 11005952 ~ 11006617 (-) True G252969
TU299463 lncRNA downstream 23095 10994816 ~ 10997436 (-) True G252967
TU299464 lncRNA downstream 23095 10994816 ~ 10997436 (-) False G252967
TU299430 lncRNA downstream 108066 10904886 ~ 10912465 (-) True G252944
XR_003403192.2 lncRNA upstream 12813 11037822 ~ 11038968 (-) True LOC113530895
XR_003403161.2 lncRNA upstream 64056 11089065 ~ 11091286 (-) False LOC113530615
TU299537 lncRNA upstream 64068 11089077 ~ 11090683 (-) True LOC113530615
TU299539 lncRNA upstream 64068 11089077 ~ 11091335 (-) False LOC113530615
TU299705 lncRNA upstream 239900 11264909 ~ 11265149 (-) True G253174
XM_026920311.2 mRNA downstream 816 11016816 ~ 11019715 (-) False kctd6b
XM_026920310.2 mRNA downstream 816 11016816 ~ 11019715 (-) True kctd6b
XM_034312181.1 mRNA downstream 4865 11009463 ~ 11015666 (-) False LOC113530950
XM_034312180.1 mRNA downstream 4865 11013958 ~ 11015666 (-) False LOC113530950
XM_026921370.2 mRNA downstream 4868 11013958 ~ 11015663 (-) False LOC113530950
XM_026921269.2 mRNA upstream 5058 11030067 ~ 11039455 (-) False slmapb
XM_026921268.2 mRNA upstream 5058 11030067 ~ 11039455 (-) True slmapb
XM_026920265.2 mRNA upstream 18254 11043263 ~ 11049735 (-) True atp6ap1lb
XM_026920729.2 mRNA upstream 89270 11114279 ~ 11115673 (-) True LOC113530590
XM_026920567.2 mRNA upstream 213243 11238252 ~ 11242304 (-) True apobec2b
TU299470 other downstream 4901 11013964 ~ 11015630 (-) False LOC113530950
TU299234 other downstream 381813 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 550997 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 990538 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 2441931 8566656 ~ 8578600 (-) False ttll10
trnae-uuc_4 other upstream 234034 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 248321 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 431012 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other upstream 431012 11456021 ~ 11462706 (-) True LOC113530309
TU300077 other upstream 531878 11556887 ~ 11568530 (-) False avpr2ab

Expression Profile