Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU299537 |
| length | 990 |
| lncRNA type | inter_gene |
| GC content | 0.52 |
| exon number | 2 |
| gene id | LOC113530615 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 11089065 ~ 11091335 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003403192.2 | lncRNA | downstream | 50109 | 11037822 ~ 11038968 (-) | True | LOC113530895 |
| TU299474 | lncRNA | downstream | 66052 | 11021959 ~ 11023025 (-) | False | abhd6b |
| TU299471 | lncRNA | downstream | 73447 | 11009824 ~ 11015630 (-) | True | LOC113530950 |
| TU299468 | lncRNA | downstream | 82460 | 11005952 ~ 11006617 (-) | True | G252969 |
| TU299464 | lncRNA | downstream | 91641 | 10994816 ~ 10997436 (-) | False | G252967 |
| TU299705 | lncRNA | upstream | 174226 | 11264909 ~ 11265149 (-) | True | G253174 |
| TU299971 | lncRNA | upstream | 262819 | 11353502 ~ 11354217 (-) | True | G253383 |
| TU299973 | lncRNA | upstream | 268832 | 11359515 ~ 11361585 (-) | True | G253385 |
| TU299972 | lncRNA | upstream | 272289 | 11362972 ~ 11364414 (-) | True | G253384 |
| XR_003403134.2 | lncRNA | upstream | 365337 | 11456020 ~ 11462531 (-) | False | LOC113530309 |
| XM_026920265.2 | mRNA | downstream | 39342 | 11043263 ~ 11049735 (-) | True | atp6ap1lb |
| XM_026921269.2 | mRNA | downstream | 49622 | 11030067 ~ 11039455 (-) | False | slmapb |
| XM_026921268.2 | mRNA | downstream | 49622 | 11030067 ~ 11039455 (-) | True | slmapb |
| XM_034312050.1 | mRNA | downstream | 64068 | 11020531 ~ 11025009 (-) | True | abhd6b |
| XM_026920310.2 | mRNA | downstream | 69362 | 11016816 ~ 11019715 (-) | True | kctd6b |
| XM_026920729.2 | mRNA | upstream | 23596 | 11114279 ~ 11115673 (-) | True | LOC113530590 |
| XM_026920567.2 | mRNA | upstream | 147569 | 11238252 ~ 11242304 (-) | True | apobec2b |
| XM_026920565.2 | mRNA | upstream | 156969 | 11247652 ~ 11254606 (-) | True | si:dkey-109j17.5 |
| XM_034311770.1 | mRNA | upstream | 156969 | 11247652 ~ 11253543 (-) | False | si:dkey-109j17.5 |
| XM_034311771.1 | mRNA | upstream | 156969 | 11247652 ~ 11253542 (-) | False | si:dkey-109j17.5 |
| TU299470 | other | downstream | 73447 | 11013964 ~ 11015630 (-) | False | LOC113530950 |
| TU299234 | other | downstream | 450359 | 10636523 ~ 10638718 (-) | False | sinup |
| XR_003403171.2 | other | downstream | 619543 | 10460694 ~ 10469534 (-) | False | usp21 |
| TU298725 | other | downstream | 1059084 | 10029492 ~ 10029993 (-) | True | G252373 |
| XR_003403155.2 | other | downstream | 2510477 | 8566656 ~ 8578600 (-) | False | ttll10 |
| trnae-uuc_4 | other | upstream | 168360 | 11259043 ~ 11259114 (-) | True | trnae-uuc_4 |
| trnan-guu_24 | other | upstream | 182647 | 11273330 ~ 11273403 (-) | True | trnan-guu_24 |
| TU299993 | other | upstream | 365338 | 11456021 ~ 11462706 (-) | False | LOC113530309 |
| TU299994 | other | upstream | 365338 | 11456021 ~ 11462706 (-) | True | LOC113530309 |
| TU300077 | other | upstream | 466204 | 11556887 ~ 11568530 (-) | False | avpr2ab |
