RNA id: XM_026920182.2


Basic Information

Item Value
RNA id XM_026920182.2
length 7073
RNA type mRNA
GC content 0.50
exon number 21
gene id magi3a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19483093 ~ 19621613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcgCTATTGGCCGCGCTGAACGTCACTCATTGTTTACTCCTTCTGTGCTGGAAAGAGTGGCGAAGCGGAGCACGAGCAACAAAGTTCTCGCGCActtgtttttttgcactttaaGAGTCGTGCTCGTgcagaggaggtttcagtgggCTCGGTTCAGGGTTCGAGCGGGTGGACGTTAAAGCGACGCGAGAGGGCGTTTCACGAGGAATTTCAGCCAAGGAAAAAAGGTCGTCGGTGGTTGGCGGTAAAGCTGGTTAGGCGGGTATTCCACGAACGCGTTTCTAAGAGCCAGGTATGTCCCGGTGTACTCTCGCGCTGAGCGCGTGAAGCAGGTGCGCTGAATCCACGCTTCTGATTAAAGAATTGAAGTGGAACCGGATTCACGTTTGGATTTCAGGAGAGGGTTTGTGGTGCTGTTTTGATTCACGCGGCGACAAATTGTTTATACCaggctgtttcttttttaaatatatatttatatttttgctgttttacaTCGTTTAATTCTCTACTCTACTAAACCGGAGATGTAGAGCGCGCGCTTCGGCTCGTGCAGCCCGACTTTGCTTCAGGTTTCAGCAGTTTACGTGGAAAACACCGCAGTAACTAAGATATCGAAGGAATTCTCCCGGAACACCGTCCCTCCCTACTTCTTCACCAGTTTTCCTTCTTCACTTTCCAGCAACGTCGACGGCAAACTTTTTCTGTCAAGCAATGCAAGTCGCGAGCTCGAGCGCTGCACCACAGCCTGCACGCGCGTTCTGAGCTCGAGCACATCCTGGAGGACCACCAGAGACTCGCGCGCGGGACGAGGAACCGTAGttctctttaaaacaaaaacaaacaaaaacaacaaggaAAAAACCGAGTATGTCGAAGacgctgaagaagaagaagcactGGGCGAACAAAGTGCAGGAGTACGCGGTGTCCTGGGGCGGAGGAGAGCTGAGCTCCGTGCTGGAGATCCGCGGCGGCGCCGAGCACGGAGAGTTTCCATACATGAGCCACAGCCTGACGTCGTCGTCgtcttcttctgctgcttcGGCGGCGCTGCGGTGGCACGCGGGCAGAGCGCCGAGTCCTGGTGACGTGCTGCTCGAGGTGAACGGCACGCCCGTGAGCGGCCTCACGCACCGCGACACGCTCGCCGTCATCCGCCACTTCCGGGAGCCCGTGCGCCTCAAGACCGTCAAACCTGGTAAGGTGTTAAACACGGACCTGCGCCACTACCTCAGCCTGCAGTTCCAGAAAGGCTCCTTGGACCACAAGCTCCAGCAAGTGATACGAGACAACCTGTACCTCCGTACCATCCCCTGTACCACAAGACAGCCGCGGGAGGGGGAGGTTCCCGGTGTGGACTATAACTTCATCAGTGTGGAGGAGTTTCGTGTTCTGGAGGAAAGCGGGCTGCTACTGGAGAGCGGAACCTACGATGGTAATTATTACGGCACCCCCAAACCTCCGGCCGAGCCTAGCCCTGTGCAGCCTGACCTGGTGGACCAGGTGCTGTTCGACGAGGAGTTTGAAACCGAGGTGCAGCGCAAACGGACCACCTCTGTCAGCAAGATGGAGAGGAAGGACAGCGCGGCGcctgaggaagaagaagaggacgAGAGGCCGGCACTTGTGAACGGACTTACAGAGCATAAGGAAGGCACCGATTGGAGGAAGACCGTACCGAGCTACACGCAGCCCAGCAGTGCCATGGATCTCGGGGCGTGGAGCATGCTGCCTGGGGACGAGAGCCAGGAGACGCTGCCCAAGAACTGGGAGATGGCCTACACTGAGACTGGCATGGTCTACTTCATAGAtCATAATACAAAGACTACAACCTGGCTGGACCCACGGCTGGCTAAGAAAGCTAAACCCCCTGAGAAGTGTGACGAGGGAGAGCTGCCGTACGGCTGGGAGAAGATCGACGACCCGCAATATGGCACCTACTATGTGGACCACATCAATCAGAAGACACAGTTCGAGAACCCTGTGATGGAAGCCAAGAAGAAGCAGAACCAGGAGGCGCCCGCGGCGAGCCAGCCAGGACTTACGCCCTCAGaggaTGGGTGTCTGAGGGGTTTCACACGTGACCCGTCGCAGCTACACGGAACAGTGTTGCGCACAGCCCTGAGGAAGAGCCCACAGGGTTTTGGCTTCACCATTATCGGTGGAGACAGACCAGACGAGTTCCTGCAGGTGAAGAACGTGCTGAGGGACGGCCCTGCGGCGCAGGACAACAAGATCGCCCCTGGGGACGTCATCGTAGACATCAATGGCACATGTGTGCTAGGTAAAACCCACGCAGATGTGGTGCAGATGTTCCAGTCAGTGGCCGTGAACCAGTACGTGGACATGGTGTTGTGCCGAGGCTACCCCCTTCCCGAGGACGCCGGTGACGAGGCTGCAGGAGAAGCGGCAGCCGCACCACCAGCCGATCGGCAGCCGCTTATACCTGATGGGCGACAGGAGGACGCCCCCGAGCTCACGCTGCTGCAGCCAGAGCTGGTGAGCGTGACGCTGGCCAAGGGGCCGAGCGGATTTGGGTTTGCCATCGCCGACTGCCCGCTGGGCCAGAAGGTGAAGATGATCCTGGACGCTCAGTGGTGCCGCGGCCTGCTCAAAGGCGACGTGATTAAAGAGATCAATCGGAAGAACGTGCAAACGCTGAGCCACACGCAGGTAGTGGACATCCTGAAAGAGCTGCCCCTCGGCTCCGAGGTCAACGTGCTCGTACTCAGAGGAGGTCAGACGTCTCCTGTGAAGTCTCTGAAGCCCtgtgccaCGGCAACGCCAATGCCAGTGACTCAGAAGCACGAAGCACCCACTAACACAGTCAGCACGGACAGTCCGAGTCCTGTTGAGCCGCTTCCCCAGACGTTTCCCCAGATGTTTCCCCAGATGTCTCCCCAGACTGTTCCTCAAGCTCTTCCTCAGTCCCTCCCCCAAGCTCCTCCCCAGTCGCTGCCCTTCCCTCCCAACGTGGTACGCTCcaactcacccaaactggacccATCTGAACTCTACCTCAAATCCAAAGCCATCCTTGACAGCAAGCCTGCCAACACCAAGGAACTGGATGTCTTTATTAAAAGGAACCAGGAGTCCGGCTTTGGTTTCAGAGTGCTGGGTGGGGAAGGAACAGATCAGCCTGTGTACATTGGTGCTATCGTTCCGCTGGGTGCAGCAGAGAAGGACGGGCGTCTACGGGCAGGTGATGAGCTCATGTGTATCGACGGTGTTCCTGTAAAAGGAAAATCCCACAAGCAGGTCCTGGAGCTGATGACCAACGCCGCGCGCAATGGCCAGGTCATGCTCACTGTGCGCAGGAAGCTCATCTACgcagaagaaagagaggatgaTGGTGGACAGTCCCAGGCAACTCCATCTCAGGTTAACGGCTCTCCCAGACCTCCTCATGCAGACGCTTCCGTTCTGTCCCAGCCGGAGCCATATGACGTCACGCTGCAGCGCAGAGACAACGAGGGCTTTGGCTTCGTCATCCTCACCTCAAAGAACAAACCACCACCAGGAGTAATTCCTCATAAGATTGGACGGATCATCAAGGGCAGCCCCACAGAACGCTCCGGAAAGCTTAAAGTGGGTGACCGCATCTCAGCCGTCAACGGCCAGTGCATCGTGGAGCTCTCACACAACGACATAGTGCAGCTGATCAAGCAGGCTGGCAACACTGTCACCCTCACTGTGCTTCCTGAAGAAGagCACAGCGGCCCTCCGTCAGCCACCAGTTCAGCCAAGCAAAGCCCAGTGGCTCAGCACAAAGCCGTGGGACAGCAGCCTGCCAGCCGCGATGACGGTAACGGCCCCGATATGGAGGAGCGAGAAGAGGGTATGGCCTGGGGTAACTACAAATCTCTCCCCAAGAATGAGACGGGCACCATGATCACCTCAGGCCCCAAGCAGGGCTGTTTCCCCGTGGAGCTGGAGCGAGGTCCACGTGGCTTTGGCTTTAGTCTCCGGGGAGGGAAGGAGTACAACATGGGCCTGTTCATCCTGAGACTGGCCGAGGATGGCCCAGCCCTGAAGGATGGCAGAATACATGTGGGAGATCAGATAGTAGAGATCAATGGCGAGCCAACCCAAGGcatcacacacacgcgtgcTATTGAGCTGATCCAAGCAGGAGGCACTaaggtgctgctgctgctgcggcCGGGCCAGGGCCTGATTCCTGACCACAATGTTATGGAGATGGTGACAACTCCACCTGCAAACTATCCAAAGTACCCTGTACCTGATGAGCCATCAATATTACCATCTTtgtcctcctcttctctcttgcCCTCTGAGGGCACATCAGCCCCTTCTCCCTCCCGCGGTCTCCATCATCAACCCCGAGATACCAGACAACCCAGAACAAGCAATTCCAGCGTGTCTCTCCGTGACAACACTCCTAGCCCCCAGAAAATGGACACTTCACGCACAGAGGGGAAAGAGCGTTCACGTAGCCCgaggaaaatggaaaagaagccttctgtttctgtgaaaaacaaaaatgtcaacGCCAGCACTCAGAGTCTGGATGTATACACGGACAGGAAAGCCCAGGGCCAAGGGGACAGAGGTAGACGCTCATCAAGCCCTAGAAAGAGTCCCAGAAAGGAACAAGAGACTGGCACCAGACAACCACCTAAGGGATATGAGGAACCGCAGAGGTATTTTGATGGGCAACATATTAATTATGGATCTGGAGGGAACCTATACATGGAGGAAGACTTAGACTTCCAACAGGACAAGGAGACAGGCGAGACGAGGCCTGAGATCGCCAGATCAGATAACGAACGACGTCACAGGGAGAAGGGGGTTGAGAGGGAAGCAGTACCTCAGAGGTCCCAATCCCAGATCCTCAATGACAGGGCCATGCCAGAGCATCAGCCTACGACCCTGAACCGCAAAGGCCATCGAGAACCCAAAGAGGGCAGGTACAGAGGGGGAGCAGGTGAGGAGAGCAAAAGGGATATGAGGGGATCTAGCAGTGTCCCACCAGAGACTTCCTGGAATGGGAACCCCAGCAGCAAGAAGGCTCCCATCACCCCTGGTCCATGGAAGGTCCCCAGCTCTGCTAAGATGCAGTCTCAGGTGGAGGGGCTCTGATGCTTGGTGGAGTTCATCAGAAATGCCAGGACACTCACTGATGGTTACTCTGAATCACTGTGTAATTGATGCATATTTTTTACGTGACTTGTACAGCATACTGTATCTTCACTTACTTTGAGACAATGCATTCATGTTCATGGTATTCCGTGTTTTAAGTATCCATTTCCTCCTGTCTGAGTTCGTGTGTTTGTCCCACCAACAGTGACACCTGTCAGTCTCATATCGTGCCAACCAGAGACTCCTGCTGGAAagacttgattaaaaaaaaaaaaaaatcctgtgagaTGCGACCATTGAATGCTCTGTTTTCCGGAATTGTGAaggagtgtttttatttcttttgctttggtttttatttcagattcagTGTGTACAGTCTTGTACTTTGTTTGAAATGCAGTGTATCCTTGATGCATCGGTGCAGTTTGCTTTGTCATTGCATGTATAATTCAACCAAACAATGCTAATCATGTACACGCTGAATGAAAGCCAGCGTTGGCCTTGTTGGCTTTCATTCATTGTTAGCTGCGTTAGCGTTGCCTGATTATGCTTTGAGTTAATAAGTGTGATCAGAGTGCACATATATTATTTAAGCTTAACATTAGTTATCACCTGTGCAGTGTATTTtagatcatttttaaagatgGTTCCTCCTTTAACTGACCAGATACTTGTGCTTAAGTATATTGTTTACTACATGTGAGCTTATGAAGAACACTATGTAATTTattgaaatggaaaagaaattgCAAATATCTTAATATTTCTGTAATCATATCTAAACATTGTGCTCCATATCCTAAAGAGCTTGATTCATCCCTCTCTGCTTTAGGGTTGCTGACTTGGTGCACTACATGCTTAAGGgtatgtatttttcacattgcTGTAGCTTTTACAATTATGCATTGTGTATCATATAGCAAGGTGTGTACATTGGGGTTAAAACTAAAGAAATGAACTAAATACTTGGTCGTATCATTAAGATTAAATGAAGGTAAAATGGGGATGTCTGGGGTAAATCatataaagcatattttttCATACAATCTAACATATATTTTGTCCTATTTCTTTATATCTTTAAAAGAACATATATGGATCAGCTTTTTGGTAAGCAGATATTATTATTGGAGAACAGCTCGATGTAAAATGAGAATAACTTTTCTCTATATAAGGTCTATGCTTGTTTGAAAGCCAAAAtgttatagatatatatataaaggtttATTACTTTAAATCCATGTAGCTCATCAAATGTAGCTGATTTGGCTATGTATCTACGTGGGTTTGGCATTATGGTTCATAATAGGGATTTCCCATAAAAATTAACTCTACAAACATCTCTTCCTGTTAATGTGTCATTGTGGTTGTTATTATAGGTGTGCACAGATTTGAGAAGAGTGGCAGCTTTGATACTTGTACAATTGATTTCAATTCCCAGTTCCACCCAGTAGTTCCACCTGAGAGTAAAGCTCGTTTTAGTCCTGTTGATGTAACATATGCTCAAACAGATTCTGATCATTTTGCAATACAAATTTATGTAATGCCATTGCATGGTATTTAAGAACTGCTTACATACGCTTAGTcctgattaaaaatgtgaagCTTTTATGGACTGTTGGAATGATTTTACTGACAATGAAACTGGGTTTGTTGTTCGATTCCTGTGGTCCATTTCCTTGTGTTTGTCATCTCATCTGATGTATATGAAACTGTGGCCTTgcattgctttattttaaagaagaaaaaaaaaggccttcTGGTCTCTACATCGTGGTagttgtaaatgtttataaaatgtacagCAACTGTTTAAATACTTGCcttcattcagaaaaaaaaaaatctccattatttttttaagtaattaaaaaaagatgagaaTATATATGTAGTGGTGAAAGAATTTAATCTGGTCATGACATTCTGTTCATGCACTgagaaataaagttttaaaggaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305220 lncRNA downstream 3361 19479524 ~ 19479732 (-) True G257838
TU305201 lncRNA downstream 17757 19464054 ~ 19465336 (-) True G257819
TU304929 lncRNA downstream 51370 19431450 ~ 19431723 (-) False LOC117599227
TU304928 lncRNA downstream 51707 19431162 ~ 19431386 (-) True G257604
TU304920 lncRNA downstream 83251 19399587 ~ 19399842 (-) True G257596
XR_003403186.2 lncRNA upstream 429811 20051421 ~ 20057906 (-) True LOC113530857
TU305425 lncRNA upstream 507295 20128905 ~ 20129112 (-) True G257980
TU305460 lncRNA upstream 522415 20144025 ~ 20144249 (-) True G258003
XR_003403139.2 lncRNA upstream 692752 20314362 ~ 20331611 (-) True LOC113530344
TU305690 lncRNA upstream 742445 20364055 ~ 20373180 (-) True LOC117599243
XM_026920190.2 mRNA downstream 1497 19466628 ~ 19481596 (-) True LOC113530319
XM_034311667.1 mRNA downstream 45459 19431451 ~ 19437634 (-) True LOC117599227
XM_026920193.2 mRNA downstream 53116 19403660 ~ 19429977 (-) False LOC113530320
XM_026920192.2 mRNA downstream 53119 19403660 ~ 19429974 (-) True LOC113530320
XM_034311655.1 mRNA downstream 96052 19370687 ~ 19387041 (-) True LOC113530570
XM_026920226.2 mRNA upstream 12444 19634054 ~ 19651590 (-) False tmem269
XM_034311672.1 mRNA upstream 12444 19634054 ~ 19651589 (-) False tmem269
XM_026920237.2 mRNA upstream 12444 19634054 ~ 19651589 (-) False tmem269
XM_026920233.2 mRNA upstream 12444 19634054 ~ 19651589 (-) False tmem269
XM_026920230.2 mRNA upstream 12444 19634054 ~ 19651589 (-) False tmem269
XR_004579690.1 other downstream 96052 19370687 ~ 19387041 (-) False LOC113530570
trnak-uuu_17 other downstream 354557 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 418511 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 969836 18509155 ~ 18513257 (-) False LOC113530839
XR_004579746.1 other downstream 1182406 18285486 ~ 18300687 (-) False znf217
XR_003403201.2 other upstream 479389 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 482164 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 488853 20110463 ~ 20119949 (-) False mlh3
TU305550 other upstream 630560 20252170 ~ 20271907 (-) True G258077
TU305957 other upstream 1209218 20830828 ~ 20867958 (-) False LOC117599256

Expression Profile