RNA id: XM_034311810.1


Basic Information

Item Value
RNA id XM_034311810.1
length 3145
RNA type mRNA
GC content 0.46
exon number 15
gene id reps2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24273737 ~ 24316415 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgcgtgcgtgcgcgtgctATAGGTTCACGCACTGCAGAGGCCgcgcctctttctctctctctctcctctgttcttCCTTGCGCGTGATCGGAGCacagtgtctcacacacacacacacacagaaacaaacacacactcacacacactcatactcatacacacatacacacacacacggttcagATCGGCGTGAATGCGCGCGGTAGGTGGGCGGGGTTTGAGATACGGAtgggactctctctctctctctctctctctctctcggtgttTATACTCGGTGACAGGCGGCCAGATaacggaggtgtgtgtgtggcggaGAAGCAGGAGCGTCCTGTGTGGGTCAAGAGCATGAGGAGATGGATGTGGATCAGTGTGGTTATTCTGATGATCCGTGGGTGATCACGGCTGAACAGTTGGATTATTACACACATCAGTTCCTCAGTCTTCAGCGCGACCTGTCCGGCCTCGTCCTGGgcccTGATGCGAAAAACTTCTTCACAAAGTCGAAGCTGCCCATCCCCGAGCTCTCGCATATATGGGAGCTGAGCGATGTGGATCGGGACGGAGCCCTCACCTTCCCGGAATTCTGCACGGCGTTTCACCTGGTAGTGGCTCGGAAAAACGGTTACGCGCTTCCTGATCACCTGCCGCACACACTCGTCTCAGCTTTCAGACCTCCACCTCAGGACTCGCAGCCTCTCATCATGTTTgaggacacagacacactcaggCAAAAGGAAATGGGCATTATCAACCAGCAGGAAGTCAGAGAGGAGACGCATGAGCAAGAATTCAGTCAGGAGAGAGCAGAGCAAAACCAGCCGATACAGCAAAGCAGCACTTTAAaaccagatcctCCTAACGAGCTGGATGTTAATGCAAAGTCAAGAACGAGACCCAGGTCTTACTCCAGCACCTCTATAGACGACGCTATGAAGAAATCAGAAGAACCCCCGACTCCTCCGCCACGTCCTCAGAAAACACACTCTCGCGCTTCATCACTGGATCTGAACAAACTCCTGCAGCAGgGTGGGAAGAGCGGCtggcttcctcctcctcctgcactTCCACCTCGAACTGTGacctcacagCAGACGCCTCACTTCCTCCCCGGTGTGGACCAAAACTCCCAGCATGCCATGCAGCAGCCTTATTTTGCAGACTTTAACAAGTGCAGAGTTCAGGAGGATTCCACGGTGCTCTCCCAAAGCCACACCCCTCAGAAACCGACGCGCCGAAAACTCCACCCGGAATGCCAGAACACCAATCACgcagtgggcgtggcctatccAAACCCCGCCTCTTCGTCAGTGCCTAAGCTGGCTCAAAAgcaGAAGAGAGAGATTCAGACGGCCATCAGGAAGAATAAAGAAGCGAATGCTGTGCTGAAACGCCTCAACAGTGAACTGCAGCAACAGCTaaagGAGATTCATCTACAGAGGGTTACTTTAGAGTCTCAGCTGGACCTGCTGCGTCCATCGGCCTCTACCTGACCTCCTGaaaacacccccacacacacacacacacacacataaaataaatgcacactgTGTCAGAGaaaaaggtgcaaaaaaaaaaaacagtatttttacgGAACTGCAATATCTTAAGGTTTGATTTGCTTTGATTAAAATCTGAAGAGCAGAAactgatcccagatcagcagcGTCACTCTGATTAACCTGGGCAGAGTTCAAACAGAGTTAATAAACACAGATCCACGATCAGCTCTATAGGGCTATAAAACAGGAGGACACCAAGAACACAGACGGCTAGAGAGTGGAGGATTAGATTAACATGGGGAACCAGGAGAACCGAGTTAACCAGGAGAACCGAGTTAACCAGGAGAGCTGAGTTAACCAGGAGAACCGAGTTAACCAGGAGAGCTGGAGTCAGAAAGGTAACATGGCGACCAGAGAACCAAGAaccgtattcagagttgagttaagtgACTGCAGTGAGGATTTAACACTGAAATTGTGCAGATCTGTATTCAGACatcagacgtaactacagacttaagcgcTATTCGgaagttacgtgagagttacgcACAGACTTTGTCCAAAACAGAGGCGTCTCAGCTACGCACAGTTCTGACCTTGAACTTGAGCttatttttccccccttttctctcattttcccATTTGCGTGATATCGGTTTGAGCAGCAGCATTAAATCCAGCtcctgtctgacagtttgatgtaaccacaacaTGTCACACCCGAGTAACTGACAAACAcgatattaaaaaataaactgcagaATAACAGgatgcgctggatcaagtgctattctacacactgctgaataatgagggtggaagccattttgtgaaattaaacccggtgattaatgtgatcattacaactAGAACTATTCACACAGTATATAATGTTGacatactagactcctattagatttatttcaacactcaccatcttctccttcatatatcatcatcttaatctttttattttccttttttaaattatctctTGTATTTATGATACATCAAATTACATTTGATgcaaaggaataaaacactatttcCTTTCACAGGCCGCATTTTCTAactcttgatttttttctggtttaaagATGCTATTGGAAAACCCTGTCTTAGACGcttttactcaagaaaaatctggaaatCTCGGAGACGTGGACTAcaggcaggtgattttaataatctgagtGTGGAGACTAGAATATTGACTTGAGCAGCTGCagaacccgactctgaatacgaggaactttccccatgtaaatattgatgtaacttatGGCCTTAAGTcgctgactctgaatacagaaatataaGTTTACTCCaaattattgttcattatttcttCATAATAACTTCTTAGTACTTggttcaagggttctttaagggttcatctGATAATTAATGGTTGTTACtgtagcttcctaaaagggttcttcTGATGTGGAAATACTTTGTGTAGGGTTCTCCAGAGAACCTTACGGAGTGTTTGTGACAGTCAGTGGCCACAGAAAACTGGAATGTATCTGCTGATCATGATTTATCAAATGTCCTTGAAACTCCTCTTACTGTGAATCTGCTCTCcatacaaatgtatttttataagtGGAACAGAATTAAATTCACAGGTTAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308490 lncRNA downstream 47779 24213334 ~ 24225958 (-) True G260548
XR_004579699.1 lncRNA downstream 133631 24136489 ~ 24140106 (-) True LOC117599232
TU308266 lncRNA downstream 298154 23974201 ~ 23975583 (-) False LOC113530810
TU308247 lncRNA downstream 393409 23880087 ~ 23880328 (-) True G260371
TU308245 lncRNA downstream 398421 23874519 ~ 23875316 (-) True G260369
TU308500 lncRNA upstream 6260 24302005 ~ 24316415 (-) False reps2
TU308533 lncRNA upstream 9484 24305229 ~ 24306670 (-) True G260581
TU308888 lncRNA upstream 54510 24350255 ~ 24435098 (-) True G260823
TU308898 lncRNA upstream 76311 24372056 ~ 24435869 (-) False G260823
TU308915 lncRNA upstream 86773 24382518 ~ 24383732 (-) False LOC113530517
XM_034312217.1 mRNA downstream 4362 24205026 ~ 24269375 (-) True nhsa
XM_026920671.2 mRNA downstream 71565 24191180 ~ 24202172 (-) True LOC113530542
XM_026921304.2 mRNA downstream 109558 24161230 ~ 24164179 (-) True scp2b
XM_026921305.2 mRNA downstream 109571 24161230 ~ 24164166 (-) False scp2b
XM_034311703.1 mRNA downstream 119249 24140115 ~ 24154488 (-) True podn
XM_034311583.1 mRNA upstream 25927 24321672 ~ 24340160 (-) False LOC113530540
XM_034311582.1 mRNA upstream 25927 24321672 ~ 24340160 (-) True LOC113530540
XM_034311584.1 mRNA upstream 27870 24323615 ~ 24340163 (-) False LOC113530540
XM_034311958.1 mRNA upstream 56150 24351895 ~ 24370680 (-) True LOC113530519
XM_034311957.1 mRNA upstream 78528 24374273 ~ 24386255 (-) True LOC113530517
TU308180 other downstream 509574 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1033391 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 1824310 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 2319132 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 2919040 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579755.1 other upstream 205988 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 209883 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 491945 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 585213 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 688714 24984459 ~ 24990531 (-) False si:ch211-149b19.4

Expression Profile